Analysis of interatomic Contacts of Structural Units in PDB entry:
1VG9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1VG9 entry

There are 8 chains in PDB entry 1VG9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	ASP 614
B	LYS 6	GLU 179
C	ASP 3	GLY 615
D	LYS 6	GLU 181
E	ASP 3	ASP 614
F	LYS 6	THR 178
G	ASP 3	GLY 615
H	LYS 6	GLU 181

There are114 helices in PDB entry 1VG9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	17	31	Right-handed alpha
Helix 2	2	A	44	47	Right-handed 310
Helix 3	3	A	51	62	Right-handed alpha
Helix 4	4	A	75	79	Right-handed 310
Helix 5	5	A	213	220	Right-handed alpha
Helix 6	6	A	221	224	Right-handed 310
Helix 7	7	A	237	247	Right-handed alpha
Helix 8	8	A	248	252	Right-handed 310
Helix 9	9	A	274	279	Right-handed alpha
Helix 10	10	A	285	300	Right-handed alpha
Helix 11	11	A	301	305	Right-handed 310
Helix 12	12	A	310	315	Right-handed 310
Helix 13	13	A	316	323	Right-handed alpha
Helix 14	14	A	327	337	Right-handed alpha
Helix 15	15	A	347	362	Right-handed alpha
Helix 16	16	A	378	391	Right-handed alpha
Helix 17	17	A	434	436	Right-handed 310
Helix 18	18	A	492	494	Right-handed 310
Helix 19	19	A	512	525	Right-handed alpha
Helix 20	20	A	558	562	Right-handed 310
Helix 21	21	A	581	596	Right-handed alpha
Helix 22	22	B	20	31	Right-handed alpha
Helix 23	23	B	74	79	Right-handed alpha
Helix 24	24	B	92	98	Right-handed alpha
Helix 25	25	B	98	111	Right-handed alpha
Helix 26	26	B	114	118	Right-handed 310
Helix 27	27	B	135	146	Right-handed alpha
Helix 28	28	B	161	179	Right-handed alpha
Helix 29	29	C	17	31	Right-handed alpha
Helix 30	30	C	44	47	Right-handed 310
Helix 31	31	C	51	62	Right-handed alpha
Helix 32	32	C	75	79	Right-handed 310
Helix 33	33	C	213	220	Right-handed alpha
Helix 34	34	C	221	224	Right-handed 310
Helix 35	35	C	237	247	Right-handed alpha
Helix 36	36	C	248	251	Right-handed 310
Helix 37	37	C	275	279	Right-handed 310
Helix 38	38	C	285	301	Right-handed alpha
Helix 39	39	C	305	309	Right-handed 310
Helix 40	40	C	316	323	Right-handed alpha
Helix 41	41	C	327	337	Right-handed alpha
Helix 42	42	C	347	362	Right-handed alpha
Helix 43	43	C	378	391	Right-handed alpha
Helix 44	44	C	434	436	Right-handed 310
Helix 45	45	C	490	494	Right-handed 310
Helix 46	46	C	512	525	Right-handed alpha
Helix 47	47	C	558	562	Right-handed 310
Helix 48	48	C	581	596	Right-handed alpha
Helix 49	49	C	607	611	Right-handed 310
Helix 50	50	D	20	31	Right-handed alpha
Helix 51	51	D	66	71	Right-handed 310
Helix 52	52	D	74	79	Right-handed alpha
Helix 53	53	D	92	98	Right-handed alpha
Helix 54	54	D	98	111	Right-handed alpha
Helix 55	55	D	114	118	Right-handed 310
Helix 56	56	D	135	146	Right-handed alpha
Helix 57	57	D	161	181	Right-handed alpha
Helix 58	58	E	17	31	Right-handed alpha
Helix 59	59	E	44	47	Right-handed 310
Helix 60	60	E	51	62	Right-handed alpha
Helix 61	61	E	75	79	Right-handed 310
Helix 62	62	E	213	220	Right-handed alpha
Helix 63	63	E	221	224	Right-handed 310
Helix 64	64	E	237	247	Right-handed alpha
Helix 65	65	E	248	251	Right-handed 310
Helix 66	66	E	274	279	Right-handed alpha
Helix 67	67	E	285	300	Right-handed alpha
Helix 68	68	E	301	305	Right-handed 310
Helix 69	69	E	310	315	Right-handed 310
Helix 70	70	E	316	323	Right-handed alpha
Helix 71	71	E	327	338	Right-handed alpha
Helix 72	72	E	347	361	Right-handed alpha
Helix 73	73	E	378	391	Right-handed alpha
Helix 74	74	E	434	436	Right-handed 310
Helix 75	75	E	492	494	Right-handed 310
Helix 76	76	E	512	525	Right-handed alpha
Helix 77	77	E	535	539	Right-handed 310
Helix 78	78	E	558	562	Right-handed 310
Helix 79	79	E	581	596	Right-handed alpha
Helix 80	80	F	20	31	Right-handed alpha
Helix 81	81	F	74	79	Right-handed alpha
Helix 82	82	F	93	98	Right-handed alpha
Helix 83	83	F	98	111	Right-handed alpha
Helix 84	84	F	114	118	Right-handed 310
Helix 85	85	F	135	146	Right-handed alpha
Helix 86	86	F	161	178	Right-handed alpha
Helix 87	87	G	17	30	Right-handed alpha
Helix 88	88	G	44	47	Right-handed 310
Helix 89	89	G	51	62	Right-handed alpha
Helix 90	90	G	75	79	Right-handed 310
Helix 91	91	G	213	220	Right-handed alpha
Helix 92	92	G	221	224	Right-handed 310
Helix 93	93	G	237	247	Right-handed alpha
Helix 94	94	G	248	252	Right-handed 310
Helix 95	95	G	285	301	Right-handed alpha
Helix 96	96	G	305	309	Right-handed 310
Helix 97	97	G	316	323	Right-handed alpha
Helix 98	98	G	327	337	Right-handed alpha
Helix 99	99	G	347	362	Right-handed alpha
Helix 100	100	G	378	391	Right-handed alpha
Helix 101	101	G	434	436	Right-handed 310
Helix 102	102	G	492	494	Right-handed 310
Helix 103	103	G	512	525	Right-handed alpha
Helix 104	104	G	558	562	Right-handed 310
Helix 105	105	G	581	596	Right-handed alpha
Helix 106	106	G	607	611	Right-handed 310
Helix 107	107	H	20	31	Right-handed alpha
Helix 108	108	H	66	71	Right-handed 310
Helix 109	109	H	74	78	Right-handed 310
Helix 110	110	H	92	98	Right-handed alpha
Helix 111	111	H	98	111	Right-handed alpha
Helix 112	112	H	114	118	Right-handed 310
Helix 113	113	H	135	146	Right-handed alpha
Helix 114	114	H	161	181	Right-handed alpha

There are 27 sheets in PDB entry 1VG9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	394	396	first strand
Strand 2	A	34	37	parallel
Strand 3	A	11	14	parallel
Strand 4	A	428	432	parallel
Strand 5	A	569	572	parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	50	first strand
Strand 2	A	226	227	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	87	first strand
Strand 2	A	401	407	anti-parallel
Strand 3	A	413	418	anti-parallel
Strand 4	A	423	425	anti-parallel

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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	102	first strand
Strand 2	A	542	553	anti-parallel
Strand 3	A	447	456	anti-parallel
Strand 4	A	501	508	anti-parallel
Strand 5	A	484	490	anti-parallel
Strand 6	A	470	474	anti-parallel
Strand 7	A	259	264	parallel
Strand 8	A	267	270	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	102	first strand
Strand 2	A	542	553	anti-parallel
Strand 3	A	526	527	parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	233	234	first strand
Strand 2	A	370	373	anti-parallel
Strand 3	A	254	256	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	612	613	first strand
Strand 2	C	253	256	parallel
Strand 3	C	370	373	anti-parallel
Strand 4	C	233	234	anti-parallel

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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	52	first strand
Strand 2	B	55	62	anti-parallel
Strand 3	B	8	14	parallel
Strand 4	B	83	89	parallel
Strand 5	B	120	125	parallel
Strand 6	B	151	153	parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	394	396	first strand
Strand 2	C	34	37	parallel
Strand 3	C	11	14	parallel
Strand 4	C	428	432	parallel
Strand 5	C	569	572	parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	50	first strand
Strand 2	C	226	227	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	87	first strand
Strand 2	C	401	407	anti-parallel
Strand 3	C	413	418	anti-parallel
Strand 4	C	423	425	anti-parallel

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There are 8 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	102	first strand
Strand 2	C	542	553	anti-parallel
Strand 3	C	447	456	anti-parallel
Strand 4	C	501	508	anti-parallel
Strand 5	C	484	489	anti-parallel
Strand 6	C	470	474	anti-parallel
Strand 7	C	259	264	parallel
Strand 8	C	267	270	anti-parallel

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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	102	first strand
Strand 2	C	542	553	anti-parallel
Strand 3	C	526	527	parallel

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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	52	first strand
Strand 2	D	55	62	anti-parallel
Strand 3	D	8	14	parallel
Strand 4	D	83	89	parallel
Strand 5	D	120	125	parallel
Strand 6	D	151	153	parallel

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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	394	396	first strand
Strand 2	E	34	37	parallel
Strand 3	E	11	14	parallel
Strand 4	E	428	432	parallel
Strand 5	E	569	572	parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	49	50	first strand
Strand 2	E	226	227	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	87	first strand
Strand 2	E	401	407	anti-parallel
Strand 3	E	413	418	anti-parallel
Strand 4	E	423	425	anti-parallel

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There are 8 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	95	102	first strand
Strand 2	E	542	553	anti-parallel
Strand 3	E	447	456	anti-parallel
Strand 4	E	501	508	anti-parallel
Strand 5	E	484	490	anti-parallel
Strand 6	E	470	474	anti-parallel
Strand 7	E	259	264	parallel
Strand 8	E	267	270	anti-parallel

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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	95	102	first strand
Strand 2	E	542	553	anti-parallel
Strand 3	E	526	527	parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	233	234	first strand
Strand 2	E	370	373	anti-parallel
Strand 3	E	253	256	anti-parallel
Strand 4	G	612	613	parallel

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There are 6 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	45	52	first strand
Strand 2	F	55	62	anti-parallel
Strand 3	F	8	14	parallel
Strand 4	F	83	89	parallel
Strand 5	F	120	125	parallel
Strand 6	F	151	153	parallel

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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	394	396	first strand
Strand 2	G	34	37	parallel
Strand 3	G	11	14	parallel
Strand 4	G	428	432	parallel
Strand 5	G	569	572	parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	49	50	first strand
Strand 2	G	226	227	anti-parallel

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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	83	87	first strand
Strand 2	G	401	407	anti-parallel
Strand 3	G	413	418	anti-parallel
Strand 4	G	423	425	anti-parallel

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There are 8 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	95	102	first strand
Strand 2	G	542	553	anti-parallel
Strand 3	G	447	456	anti-parallel
Strand 4	G	501	508	anti-parallel
Strand 5	G	484	490	anti-parallel
Strand 6	G	469	474	anti-parallel
Strand 7	G	254	263	parallel
Strand 8	G	268	270	anti-parallel

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There are 9 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	233	234	first strand
Strand 2	G	370	373	anti-parallel
Strand 3	G	254	263	anti-parallel
Strand 4	G	469	474	parallel
Strand 5	G	484	490	anti-parallel
Strand 6	G	501	508	anti-parallel
Strand 7	G	447	456	anti-parallel
Strand 8	G	542	553	anti-parallel
Strand 9	G	526	527	parallel

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There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	45	52	first strand
Strand 2	H	55	62	anti-parallel
Strand 3	H	8	14	parallel
Strand 4	H	83	89	parallel
Strand 5	H	120	125	parallel
Strand 6	H	151	153	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1VG9

Analysis of interatomic Contacts of Structural Units in PDB entry:
1VG9