Analysis of interatomic Contacts of Structural Units in PDB entry:
1VGF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VGF entry

There are 2 chains in PDB entry 1VGF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 5PRO 198
B
 ASN 1005PRO 1198
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1VGF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 30Right-handed alpha
Helix 2
2
A
42 52Right-handed alpha
Helix 3
3
A
75 90Right-handed alpha
Helix 4
4
A
98 108Right-handed alpha
Helix 5
5
A
109 114Right-handed alpha
Helix 6
6
A
165 170Right-handed 310
Helix 7
7
B
1014 1016Right-handed 310
Helix 8
8
B
1017 1030Right-handed alpha
Helix 9
9
B
1042 1053Right-handed alpha
Helix 10
10
B
1075 1090Right-handed alpha
Helix 11
11
B
1095 1108Right-handed alpha
Helix 12
12
B
1109 1114Right-handed alpha
Helix 13
13
B
1165 1170Right-handed 310
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There are 4 sheets in PDB entry 1VGF. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 11first strand
Strand 2
A
129 141parallel
Strand 3
A
149 161anti-parallel
Strand 4
A
177 192anti-parallel
Strand 5
A
58 74anti-parallel
Strand 6
B
1058 1074anti-parallel
Strand 7
B
1177 1192anti-parallel
Strand 8
B
1149 1161anti-parallel
Strand 9
B
1130 1141anti-parallel
Strand 10
B
1008 1011parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 124first strand
Strand 2
A
129 141anti-parallel
Strand 3
A
149 161anti-parallel
Strand 4
A
177 192anti-parallel
Strand 5
A
58 74anti-parallel
Strand 6
B
1058 1074anti-parallel
Strand 7
B
1177 1192anti-parallel
Strand 8
B
1149 1161anti-parallel
Strand 9
B
1130 1141anti-parallel
Strand 10
B
1119 1123anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 35first strand
Strand 2
A
38 41anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1032 1035first strand
Strand 2
B
1038 1041anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il