Analysis of interatomic Contacts of Structural Units in PDB entry:
1VGM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VGM entry

There are 2 chains in PDB entry 1VGM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 3ARG 378
B
 VAL 3ARG 378
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 1VGM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 10Right-handed 310
Helix 2
2
A
36 43Right-handed alpha
Helix 3
3
A
44 55Right-handed alpha
Helix 4
4
A
59 72Right-handed alpha
Helix 5
5
A
77 85Right-handed alpha
Helix 6
6
A
92 109Right-handed alpha
Helix 7
7
A
116 140Right-handed alpha
Helix 8
8
A
152 163Right-handed alpha
Helix 9
9
A
167 181Right-handed alpha
Helix 10
10
A
187 198Right-handed alpha
Helix 11
11
A
202 215Right-handed alpha
Helix 12
12
A
221 234Right-handed alpha
Helix 13
13
A
235 237Right-handed 310
Helix 14
14
A
238 247Right-handed alpha
Helix 15
15
A
266 281Right-handed alpha
Helix 16
16
A
283 305Right-handed alpha
Helix 17
17
A
306 308Right-handed 310
Helix 18
18
A
313 324Right-handed alpha
Helix 19
19
A
327 329Right-handed 310
Helix 20
20
A
330 354Right-handed alpha
Helix 21
21
A
374 378Right-handed 310
Helix 22
22
B
6 10Right-handed 310
Helix 23
23
B
36 43Right-handed alpha
Helix 24
24
B
44 55Right-handed alpha
Helix 25
25
B
59 72Right-handed alpha
Helix 26
26
B
77 87Right-handed alpha
Helix 27
27
B
92 109Right-handed alpha
Helix 28
28
B
116 140Right-handed alpha
Helix 29
29
B
152 163Right-handed alpha
Helix 30
30
B
167 181Right-handed alpha
Helix 31
31
B
187 198Right-handed alpha
Helix 32
32
B
202 215Right-handed alpha
Helix 33
33
B
221 234Right-handed alpha
Helix 34
34
B
235 237Right-handed 310
Helix 35
35
B
238 247Right-handed alpha
Helix 36
36
B
266 281Right-handed alpha
Helix 37
37
B
283 303Right-handed alpha
Helix 38
38
B
313 324Right-handed alpha
Helix 39
39
B
327 329Right-handed 310
Helix 40
40
B
330 354Right-handed alpha
Helix 41
41
B
374 378Right-handed 310
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There are 5 sheets in PDB entry 1VGM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 17first strand
Strand 2
B
361 364parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 23first strand
Strand 2
A
28 31anti-parallel
Strand 3
A
34 35anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
361 364first strand
Strand 2
B
13 17parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 23first strand
Strand 2
B
28 31anti-parallel
Strand 3
B
34 35anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
257 258first strand
Strand 2
B
310 311anti-parallel
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