Analysis of interatomic Contacts of Structural Units in PDB entry:
1VGN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VGN entry

There are 2 chains in PDB entry 1VGN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 4SER 220
B
 LEU 4LYS 221
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1VGN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
52 65Right-handed alpha
Helix 2
2
A
79 84Right-handed alpha
Helix 3
3
A
85 92Right-handed alpha
Helix 4
4
A
100 109Right-handed alpha
Helix 5
5
A
175 187Right-handed alpha
Helix 6
6
A
203 219Right-handed alpha
Helix 7
7
B
52 65Right-handed alpha
Helix 8
8
B
79 84Right-handed alpha
Helix 9
9
B
85 92Right-handed alpha
Helix 10
10
B
99 109Right-handed alpha
Helix 11
11
B
158 160Right-handed 310
Helix 12
12
B
175 187Right-handed alpha
Helix 13
13
B
203 219Right-handed alpha
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There are 4 sheets in PDB entry 1VGN. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 13first strand
Strand 2
A
16 25anti-parallel
Strand 3
A
29 40anti-parallel
Strand 4
A
43 47anti-parallel
Strand 5
A
69 74parallel
Strand 6
A
96 99parallel
Strand 7
A
116 118parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 126first strand
Strand 2
A
130 133anti-parallel
Strand 3
A
145 148anti-parallel
Strand 4
A
153 157anti-parallel
Strand 5
A
192 195parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 13first strand
Strand 2
B
16 25anti-parallel
Strand 3
B
29 39anti-parallel
Strand 4
B
43 47anti-parallel
Strand 5
B
69 74parallel
Strand 6
B
96 97parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 126first strand
Strand 2
B
130 133anti-parallel
Strand 3
B
145 148anti-parallel
Strand 4
B
153 157anti-parallel
Strand 5
B
192 195parallel
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