Analysis of interatomic Contacts of Structural Units in PDB entry:
1VGP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VGP entry

There is 1 chain in PDB entry 1VGP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 373
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 1VGP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
34 41Right-handed alpha
Helix 2
2
A
42 53Right-handed alpha
Helix 3
3
A
57 71Right-handed alpha
Helix 4
4
A
75 85Right-handed alpha
Helix 5
5
A
90 106Right-handed alpha
Helix 6
6
A
112 136Right-handed alpha
Helix 7
7
A
148 159Right-handed alpha
Helix 8
8
A
163 176Right-handed alpha
Helix 9
9
A
183 194Right-handed alpha
Helix 10
10
A
198 211Right-handed alpha
Helix 11
11
A
220 229Right-handed alpha
Helix 12
12
A
234 245Right-handed alpha
Helix 13
13
A
261 279Right-handed alpha
Helix 14
14
A
280 301Right-handed alpha
Helix 15
15
A
302 304Right-handed 310
Helix 16
16
A
308 320Right-handed alpha
Helix 17
17
A
323 325Right-handed 310
Helix 18
18
A
326 347Right-handed alpha
Helix 19
19
A
348 350Right-handed 310
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There is 1 sheet ( A) in PDB entry 1VGP.

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 21first strand
Strand 2
A
26 29anti-parallel
Strand 3
A
32 33anti-parallel
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