Analysis of interatomic Contacts of Structural Units in PDB entry:
1VGQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VGQ entry

There are 2 chains in PDB entry 1VGQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2VAL 428
B
 THR 2VAL 428
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 44 helices in PDB entry 1VGQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 29Right-handed alpha
Helix 2
2
A
43 48Right-handed 310
Helix 3
3
A
57 64Right-handed alpha
Helix 4
4
A
76 90Right-handed alpha
Helix 5
5
A
100 105Right-handed alpha
Helix 6
6
A
108 116Right-handed alpha
Helix 7
7
A
139 147Right-handed alpha
Helix 8
8
A
169 191Right-handed alpha
Helix 9
9
A
200 208Right-handed alpha
Helix 10
10
A
208 222Right-handed alpha
Helix 11
11
A
227 231Right-handed 310
Helix 12
12
A
244 248Right-handed 310
Helix 13
13
A
285 287Right-handed 310
Helix 14
14
A
288 296Right-handed alpha
Helix 15
15
A
298 302Right-handed 310
Helix 16
16
A
309 314Right-handed alpha
Helix 17
17
A
316 327Right-handed alpha
Helix 18
18
A
332 343Right-handed alpha
Helix 19
19
A
352 358Right-handed alpha
Helix 20
20
A
359 365Right-handed alpha
Helix 21
21
A
404 412Right-handed alpha
Helix 22
22
A
415 425Right-handed alpha
Helix 23
23
B
17 29Right-handed alpha
Helix 24
24
B
57 64Right-handed alpha
Helix 25
25
B
76 90Right-handed alpha
Helix 26
26
B
100 105Right-handed alpha
Helix 27
27
B
108 116Right-handed alpha
Helix 28
28
B
139 147Right-handed alpha
Helix 29
29
B
149 153Right-handed 310
Helix 30
30
B
168 191Right-handed alpha
Helix 31
31
B
200 208Right-handed alpha
Helix 32
32
B
208 222Right-handed alpha
Helix 33
33
B
227 231Right-handed 310
Helix 34
34
B
244 248Right-handed 310
Helix 35
35
B
285 287Right-handed 310
Helix 36
36
B
288 296Right-handed alpha
Helix 37
37
B
298 303Right-handed 310
Helix 38
38
B
309 314Right-handed alpha
Helix 39
39
B
316 327Right-handed alpha
Helix 40
40
B
332 343Right-handed alpha
Helix 41
41
B
352 358Right-handed alpha
Helix 42
42
B
359 365Right-handed alpha
Helix 43
43
B
404 412Right-handed alpha
Helix 44
44
B
415 425Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 1VGQ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 71first strand
Strand 2
A
32 37parallel
Strand 3
A
9 12parallel
Strand 4
A
92 95parallel
Strand 5
A
120 125parallel
Strand 6
A
195 199parallel
Strand 7
B
386 388anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 268first strand
Strand 2
A
279 283anti-parallel
Strand 3
A
347 349anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 371first strand
Strand 2
A
379 382anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 388first strand
Strand 2
B
195 199anti-parallel
Strand 3
B
120 125parallel
Strand 4
B
92 95parallel
Strand 5
B
9 12parallel
Strand 6
B
32 37parallel
Strand 7
B
67 71parallel
Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
264 268first strand
Strand 2
B
279 283anti-parallel
Strand 3
B
347 349anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
368 371first strand
Strand 2
B
379 382anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il