Analysis of interatomic Contacts of Structural Units in PDB entry:
1VGT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VGT entry

There are 2 chains in PDB entry 1VGT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 6LEU 227
B
 LEU 6ARG 229
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1VGT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
26 29Right-handed 310
Helix 2
2
A
37 47Right-handed alpha
Helix 3
3
A
63 68Right-handed alpha
Helix 4
4
A
69 73Right-handed 310
Helix 5
5
A
84 95Right-handed alpha
Helix 6
6
A
113 122Right-handed alpha
Helix 7
7
A
122 127Right-handed alpha
Helix 8
8
A
171 184Right-handed alpha
Helix 9
9
A
190 199Right-handed alpha
Helix 10
10
A
218 227Right-handed alpha
Helix 11
11
B
37 47Right-handed alpha
Helix 12
12
B
64 73Right-handed 310
Helix 13
13
B
84 94Right-handed alpha
Helix 14
14
B
113 122Right-handed alpha
Helix 15
15
B
122 127Right-handed alpha
Helix 16
16
B
171 184Right-handed alpha
Helix 17
17
B
190 198Right-handed alpha
Helix 18
18
B
218 229Right-handed alpha
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There are 6 sheets in PDB entry 1VGT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 80first strand
Strand 2
A
51 58parallel
Strand 3
A
8 13parallel
Strand 4
A
101 104parallel
Strand 5
A
160 170anti-parallel
Strand 6
A
131 136anti-parallel
Strand 7
A
203 206parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 80first strand
Strand 2
A
51 58parallel
Strand 3
A
8 13parallel
Strand 4
A
101 104parallel
Strand 5
A
160 170anti-parallel
Strand 6
B
141 144anti-parallel
Strand 7
B
151 155anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
A
35 36anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 155first strand
Strand 2
A
141 144anti-parallel
Strand 3
B
160 170anti-parallel
Strand 4
B
101 104anti-parallel
Strand 5
B
8 14parallel
Strand 6
B
51 58parallel
Strand 7
B
76 80parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 155first strand
Strand 2
A
141 144anti-parallel
Strand 3
B
160 170anti-parallel
Strand 4
B
131 136anti-parallel
Strand 5
B
203 206parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 32first strand
Strand 2
B
35 36anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il