Analysis of interatomic Contacts of Structural Units in PDB entry:
1VGV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VGV entry

There are 4 chains in PDB entry 1VGV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1LEU 376
B
 MSE 1LEU 376
C
 MSE 1ARG 373
D
 MSE 1ILE 374
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 72 helices in PDB entry 1VGV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 26Right-handed alpha
Helix 2
2
A
39 42Right-handed 310
Helix 3
3
A
43 50Right-handed alpha
Helix 4
4
A
66 86Right-handed alpha
Helix 5
5
A
96 108Right-handed alpha
Helix 6
6
A
130 140Right-handed alpha
Helix 7
7
A
149 159Right-handed alpha
Helix 8
8
A
162 164Right-handed 310
Helix 9
9
A
171 184Right-handed alpha
Helix 10
10
A
187 196Right-handed alpha
Helix 11
11
A
219 236Right-handed alpha
Helix 12
12
A
248 260Right-handed alpha
Helix 13
13
A
272 283Right-handed alpha
Helix 14
14
A
292 301Right-handed 310
Helix 15
15
A
313 319Right-handed alpha
Helix 16
16
A
328 342Right-handed alpha
Helix 17
17
A
342 351Right-handed alpha
Helix 18
18
A
360 372Right-handed alpha
Helix 19
19
B
9 26Right-handed alpha
Helix 20
20
B
40 51Right-handed alpha
Helix 21
21
B
66 86Right-handed alpha
Helix 22
22
B
96 108Right-handed alpha
Helix 23
23
B
130 140Right-handed alpha
Helix 24
24
B
149 159Right-handed alpha
Helix 25
25
B
162 164Right-handed 310
Helix 26
26
B
171 182Right-handed alpha
Helix 27
27
B
187 197Right-handed alpha
Helix 28
28
B
219 236Right-handed alpha
Helix 29
29
B
248 260Right-handed alpha
Helix 30
30
B
272 283Right-handed alpha
Helix 31
31
B
290 297Right-handed alpha
Helix 32
32
B
298 301Right-handed 310
Helix 33
33
B
313 319Right-handed alpha
Helix 34
34
B
328 342Right-handed alpha
Helix 35
35
B
342 352Right-handed alpha
Helix 36
36
B
360 372Right-handed alpha
Helix 37
37
C
9 26Right-handed alpha
Helix 38
38
C
39 51Right-handed alpha
Helix 39
39
C
66 86Right-handed alpha
Helix 40
40
C
96 109Right-handed alpha
Helix 41
41
C
130 139Right-handed alpha
Helix 42
42
C
149 159Right-handed alpha
Helix 43
43
C
162 164Right-handed 310
Helix 44
44
C
172 181Right-handed alpha
Helix 45
45
C
187 197Right-handed alpha
Helix 46
46
C
219 236Right-handed alpha
Helix 47
47
C
248 252Right-handed 310
Helix 48
48
C
253 260Right-handed alpha
Helix 49
49
C
272 283Right-handed alpha
Helix 50
50
C
290 297Right-handed alpha
Helix 51
51
C
298 301Right-handed 310
Helix 52
52
C
313 319Right-handed alpha
Helix 53
53
C
328 342Right-handed alpha
Helix 54
54
C
342 352Right-handed alpha
Helix 55
55
C
360 371Right-handed alpha
Helix 56
56
D
9 26Right-handed alpha
Helix 57
57
D
43 50Right-handed alpha
Helix 58
58
D
66 86Right-handed alpha
Helix 59
59
D
96 108Right-handed alpha
Helix 60
60
D
130 142Right-handed alpha
Helix 61
61
D
149 159Right-handed alpha
Helix 62
62
D
162 164Right-handed 310
Helix 63
63
D
171 183Right-handed alpha
Helix 64
64
D
189 196Right-handed alpha
Helix 65
65
D
221 236Right-handed alpha
Helix 66
66
D
252 259Right-handed alpha
Helix 67
67
D
272 283Right-handed alpha
Helix 68
68
D
291 301Right-handed 310
Helix 69
69
D
313 319Right-handed alpha
Helix 70
70
D
328 342Right-handed alpha
Helix 71
71
D
342 352Right-handed alpha
Helix 72
72
D
360 372Right-handed alpha
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There are 8 sheets in PDB entry 1VGV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 57first strand
Strand 2
A
30 35parallel
Strand 3
A
2 7parallel
Strand 4
A
89 93parallel
Strand 5
A
113 116parallel
Strand 6
A
144 147parallel
Strand 7
A
166 168parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 268first strand
Strand 2
A
239 244parallel
Strand 3
A
206 211parallel
Strand 4
A
285 288parallel
Strand 5
A
304 307parallel
Strand 6
A
322 325parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 57first strand
Strand 2
B
30 35parallel
Strand 3
B
2 7parallel
Strand 4
B
89 93parallel
Strand 5
B
113 116parallel
Strand 6
B
144 147parallel
Strand 7
B
166 168parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
265 268first strand
Strand 2
B
239 244parallel
Strand 3
B
206 211parallel
Strand 4
B
285 288parallel
Strand 5
B
304 306parallel
Strand 6
B
322 324parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
56 57first strand
Strand 2
C
30 35parallel
Strand 3
C
2 7parallel
Strand 4
C
89 93parallel
Strand 5
C
113 116parallel
Strand 6
C
144 147parallel
Strand 7
C
166 168parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
265 266first strand
Strand 2
C
239 242parallel
Strand 3
C
206 210parallel
Strand 4
C
285 288parallel
Strand 5
C
304 306parallel
Strand 6
C
322 324parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
56 57first strand
Strand 2
D
30 35parallel
Strand 3
D
2 7parallel
Strand 4
D
89 93parallel
Strand 5
D
113 116parallel
Strand 6
D
144 147parallel
Strand 7
D
166 168parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
265 268first strand
Strand 2
D
239 244parallel
Strand 3
D
206 211parallel
Strand 4
D
285 288parallel
Strand 5
D
304 306parallel
Strand 6
D
322 324parallel
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