Analysis of interatomic Contacts of Structural Units in PDB entry:
1VGW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VGW entry

There are 6 chains in PDB entry 1VGW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2ASP 227
B
 LEU 1ASP 227
C
 SER 0ASP 227
D
 ARG 3ASP 227
E
 SER 0ASP 227
F
 LYS 2ASP 227
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 1VGW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
34 44Right-handed alpha
Helix 2
2
A
61 69Right-handed alpha
Helix 3
3
A
81 97Right-handed alpha
Helix 4
4
A
116 128Right-handed alpha
Helix 5
5
A
172 181Right-handed alpha
Helix 6
6
A
189 196Right-handed alpha
Helix 7
7
A
215 226Right-handed alpha
Helix 8
8
B
33 44Right-handed alpha
Helix 9
9
B
60 69Right-handed alpha
Helix 10
10
B
81 96Right-handed alpha
Helix 11
11
B
116 128Right-handed alpha
Helix 12
12
B
172 179Right-handed alpha
Helix 13
13
B
189 196Right-handed alpha
Helix 14
14
B
215 227Right-handed alpha
Helix 15
15
C
33 44Right-handed alpha
Helix 16
16
C
61 69Right-handed alpha
Helix 17
17
C
81 96Right-handed alpha
Helix 18
18
C
116 128Right-handed alpha
Helix 19
19
C
172 179Right-handed alpha
Helix 20
20
C
189 196Right-handed alpha
Helix 21
21
C
215 227Right-handed alpha
Helix 22
22
D
23 26Right-handed 310
Helix 23
23
D
34 44Right-handed alpha
Helix 24
24
D
61 69Right-handed alpha
Helix 25
25
D
81 96Right-handed alpha
Helix 26
26
D
116 128Right-handed alpha
Helix 27
27
D
172 179Right-handed alpha
Helix 28
28
D
189 196Right-handed alpha
Helix 29
29
D
215 227Right-handed alpha
Helix 30
30
E
34 44Right-handed alpha
Helix 31
31
E
61 69Right-handed alpha
Helix 32
32
E
81 96Right-handed alpha
Helix 33
33
E
116 128Right-handed alpha
Helix 34
34
E
172 180Right-handed alpha
Helix 35
35
E
189 196Right-handed alpha
Helix 36
36
E
215 217Right-handed 310
Helix 37
37
E
218 227Right-handed alpha
Helix 38
38
F
34 44Right-handed alpha
Helix 39
39
F
61 69Right-handed alpha
Helix 40
40
F
81 96Right-handed alpha
Helix 41
41
F
116 128Right-handed alpha
Helix 42
42
F
172 179Right-handed alpha
Helix 43
43
F
189 196Right-handed alpha
Helix 44
44
F
215 217Right-handed 310
Helix 45
45
F
218 226Right-handed alpha
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There are 16 sheets in PDB entry 1VGW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 75first strand
Strand 2
A
50 54parallel
Strand 3
A
5 10parallel
Strand 4
A
104 107parallel
Strand 5
A
161 171anti-parallel
Strand 6
A
134 139anti-parallel
Strand 7
A
202 205parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 75first strand
Strand 2
A
50 54parallel
Strand 3
A
5 10parallel
Strand 4
A
104 107parallel
Strand 5
A
161 171anti-parallel
Strand 6
B
144 147anti-parallel
Strand 7
B
152 156anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 29first strand
Strand 2
A
32 33anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 156first strand
Strand 2
A
144 147anti-parallel
Strand 3
B
161 171anti-parallel
Strand 4
B
104 107anti-parallel
Strand 5
B
5 10parallel
Strand 6
B
50 54parallel
Strand 7
B
73 75parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 156first strand
Strand 2
A
144 147anti-parallel
Strand 3
B
161 171anti-parallel
Strand 4
B
134 139anti-parallel
Strand 5
B
202 205parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
73 75first strand
Strand 2
C
50 54parallel
Strand 3
C
5 10parallel
Strand 4
C
104 107parallel
Strand 5
C
161 171anti-parallel
Strand 6
C
134 139anti-parallel
Strand 7
C
202 205parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
73 75first strand
Strand 2
C
50 54parallel
Strand 3
C
5 10parallel
Strand 4
C
104 107parallel
Strand 5
C
161 171anti-parallel
Strand 6
D
144 147anti-parallel
Strand 7
D
152 156anti-parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
152 156first strand
Strand 2
C
144 147anti-parallel
Strand 3
D
161 171anti-parallel
Strand 4
D
104 107anti-parallel
Strand 5
D
5 11parallel
Strand 6
D
50 55parallel
Strand 7
D
73 75parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
152 156first strand
Strand 2
C
144 147anti-parallel
Strand 3
D
161 171anti-parallel
Strand 4
D
134 139anti-parallel
Strand 5
D
202 205parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
28 29first strand
Strand 2
D
32 33anti-parallel
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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
73 75first strand
Strand 2
E
50 54parallel
Strand 3
E
5 10parallel
Strand 4
E
104 107parallel
Strand 5
E
161 171anti-parallel
Strand 6
E
134 139anti-parallel
Strand 7
E
202 205parallel
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There are 7 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
73 75first strand
Strand 2
E
50 54parallel
Strand 3
E
5 10parallel
Strand 4
E
104 107parallel
Strand 5
E
161 171anti-parallel
Strand 6
F
144 147anti-parallel
Strand 7
F
152 156anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
28 29first strand
Strand 2
E
32 33anti-parallel
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There are 7 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
152 156first strand
Strand 2
E
144 147anti-parallel
Strand 3
F
161 171anti-parallel
Strand 4
F
104 107anti-parallel
Strand 5
F
5 10parallel
Strand 6
F
50 54parallel
Strand 7
F
73 75parallel
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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
152 156first strand
Strand 2
E
144 147anti-parallel
Strand 3
F
161 171anti-parallel
Strand 4
F
134 139anti-parallel
Strand 5
F
202 205parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
28 29first strand
Strand 2
F
32 33anti-parallel
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