Analysis of interatomic Contacts of Structural Units in PDB entry:
1VGZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VGZ entry

There are 2 chains in PDB entry 1VGZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 1ASP 227
B
 LYS 2ASP 227
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 1VGZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
34 45Right-handed alpha
Helix 2
2
A
62 67Right-handed alpha
Helix 3
3
A
81 95Right-handed alpha
Helix 4
4
A
116 128Right-handed alpha
Helix 5
5
A
172 181Right-handed alpha
Helix 6
6
A
189 196Right-handed alpha
Helix 7
7
A
215 226Right-handed alpha
Helix 8
8
B
34 45Right-handed alpha
Helix 9
9
B
61 67Right-handed alpha
Helix 10
10
B
81 95Right-handed alpha
Helix 11
11
B
116 128Right-handed alpha
Helix 12
12
B
172 180Right-handed alpha
Helix 13
13
B
189 196Right-handed alpha
Helix 14
14
B
215 227Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 1VGZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 75first strand
Strand 2
A
50 54parallel
Strand 3
A
5 10parallel
Strand 4
A
104 107parallel
Strand 5
A
161 171anti-parallel
Strand 6
A
134 139anti-parallel
Strand 7
A
202 205parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 75first strand
Strand 2
A
50 54parallel
Strand 3
A
5 10parallel
Strand 4
A
104 107parallel
Strand 5
A
161 171anti-parallel
Strand 6
B
144 147anti-parallel
Strand 7
B
152 156anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 29first strand
Strand 2
A
32 33anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 156first strand
Strand 2
A
144 147anti-parallel
Strand 3
B
161 171anti-parallel
Strand 4
B
104 107anti-parallel
Strand 5
B
5 10parallel
Strand 6
B
50 54parallel
Strand 7
B
73 75parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 156first strand
Strand 2
A
144 147anti-parallel
Strand 3
B
161 171anti-parallel
Strand 4
B
134 139anti-parallel
Strand 5
B
202 205parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 29first strand
Strand 2
B
32 33anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il