Analysis of interatomic Contacts of Structural Units in PDB entry:
1VH1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VH1 entry

There are 4 chains in PDB entry 1VH1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2MSE 247
B
 SER 2MSE 247
C
 SER 2MSE 247
D
 SER 2MSE 247
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 1VH1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
29 40Right-handed alpha
Helix 2
2
A
51 61Right-handed alpha
Helix 3
3
A
75 86Right-handed alpha
Helix 4
4
A
105 119Right-handed alpha
Helix 5
5
A
132 137Right-handed alpha
Helix 6
6
A
163 168Right-handed alpha
Helix 7
7
A
189 198Right-handed alpha
Helix 8
8
A
201 208Right-handed alpha
Helix 9
9
A
211 217Right-handed alpha
Helix 10
10
A
236 247Right-handed alpha
Helix 11
11
B
28 40Right-handed alpha
Helix 12
12
B
51 61Right-handed alpha
Helix 13
13
B
76 86Right-handed alpha
Helix 14
14
B
105 119Right-handed alpha
Helix 15
15
B
132 137Right-handed alpha
Helix 16
16
B
163 170Right-handed alpha
Helix 17
17
B
189 198Right-handed alpha
Helix 18
18
B
201 208Right-handed alpha
Helix 19
19
B
211 217Right-handed alpha
Helix 20
20
B
242 247Right-handed alpha
Helix 21
21
C
18 21Right-handed 310
Helix 22
22
C
29 41Right-handed alpha
Helix 23
23
C
51 61Right-handed alpha
Helix 24
24
C
75 87Right-handed alpha
Helix 25
25
C
105 119Right-handed alpha
Helix 26
26
C
132 137Right-handed alpha
Helix 27
27
C
163 168Right-handed alpha
Helix 28
28
C
189 198Right-handed alpha
Helix 29
29
C
201 208Right-handed alpha
Helix 30
30
C
211 217Right-handed alpha
Helix 31
31
C
236 245Right-handed alpha
Helix 32
32
D
18 21Right-handed 310
Helix 33
33
D
29 40Right-handed alpha
Helix 34
34
D
51 61Right-handed alpha
Helix 35
35
D
75 86Right-handed alpha
Helix 36
36
D
105 118Right-handed alpha
Helix 37
37
D
132 137Right-handed alpha
Helix 38
38
D
163 170Right-handed alpha
Helix 39
39
D
189 196Right-handed alpha
Helix 40
40
D
201 208Right-handed alpha
Helix 41
41
D
211 217Right-handed alpha
Helix 42
42
D
236 247Right-handed alpha
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There are 11 sheets in PDB entry 1VH1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 67first strand
Strand 2
A
44 49parallel
Strand 3
A
4 8parallel
Strand 4
A
93 96parallel
Strand 5
A
179 188anti-parallel
Strand 6
A
123 129anti-parallel
Strand 7
A
221 225parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 24first strand
Strand 2
A
27 28anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 146first strand
Strand 2
A
152 156anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 67first strand
Strand 2
B
44 49parallel
Strand 3
B
3 9parallel
Strand 4
B
93 95parallel
Strand 5
B
179 188anti-parallel
Strand 6
B
123 129anti-parallel
Strand 7
B
221 225parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 146first strand
Strand 2
B
152 156anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
64 67first strand
Strand 2
C
44 49parallel
Strand 3
C
4 8parallel
Strand 4
C
93 96parallel
Strand 5
C
179 188anti-parallel
Strand 6
C
143 146anti-parallel
Strand 7
C
152 156anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
64 67first strand
Strand 2
C
44 49parallel
Strand 3
C
4 8parallel
Strand 4
C
93 96parallel
Strand 5
C
179 188anti-parallel
Strand 6
C
123 129anti-parallel
Strand 7
C
221 225parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
23 24first strand
Strand 2
C
27 28anti-parallel
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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
64 67first strand
Strand 2
D
44 49parallel
Strand 3
D
4 8parallel
Strand 4
D
93 96parallel
Strand 5
D
179 188anti-parallel
Strand 6
D
123 129anti-parallel
Strand 7
D
221 225parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
23 24first strand
Strand 2
D
27 28anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
143 146first strand
Strand 2
D
152 156anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il