Analysis of interatomic Contacts of Structural Units in PDB entry:
1VHC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VHC entry

There are 6 chains in PDB entry 1VHC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2GLU 213
B
 SER 2GLU 213
C
 SER 2GLU 213
D
 SER 2GLU 213
E
 SER 2GLU 213
F
 LEU 1GLU 213
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 72 helices in PDB entry 1VHC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 16Right-handed alpha
Helix 2
2
A
25 27Right-handed 310
Helix 3
3
A
28 39Right-handed alpha
Helix 4
4
A
52 64Right-handed alpha
Helix 5
5
A
76 87Right-handed alpha
Helix 6
6
A
97 107Right-handed alpha
Helix 7
7
A
117 127Right-handed alpha
Helix 8
8
A
141 151Right-handed alpha
Helix 9
9
A
168 174Right-handed alpha
Helix 10
10
A
184 187Right-handed 310
Helix 11
11
A
188 194Right-handed alpha
Helix 12
12
A
196 212Right-handed alpha
Helix 13
13
B
4 16Right-handed alpha
Helix 14
14
B
25 27Right-handed 310
Helix 15
15
B
28 39Right-handed alpha
Helix 16
16
B
52 64Right-handed alpha
Helix 17
17
B
76 87Right-handed alpha
Helix 18
18
B
97 107Right-handed alpha
Helix 19
19
B
117 127Right-handed alpha
Helix 20
20
B
141 150Right-handed alpha
Helix 21
21
B
168 174Right-handed alpha
Helix 22
22
B
184 187Right-handed 310
Helix 23
23
B
188 194Right-handed alpha
Helix 24
24
B
196 212Right-handed alpha
Helix 25
25
C
4 16Right-handed alpha
Helix 26
26
C
25 27Right-handed 310
Helix 27
27
C
28 39Right-handed alpha
Helix 28
28
C
52 64Right-handed alpha
Helix 29
29
C
76 87Right-handed alpha
Helix 30
30
C
97 107Right-handed alpha
Helix 31
31
C
117 127Right-handed alpha
Helix 32
32
C
141 151Right-handed alpha
Helix 33
33
C
168 174Right-handed alpha
Helix 34
34
C
184 187Right-handed 310
Helix 35
35
C
188 194Right-handed alpha
Helix 36
36
C
196 213Right-handed alpha
Helix 37
37
D
4 16Right-handed alpha
Helix 38
38
D
25 27Right-handed 310
Helix 39
39
D
28 39Right-handed alpha
Helix 40
40
D
52 64Right-handed alpha
Helix 41
41
D
76 87Right-handed alpha
Helix 42
42
D
97 107Right-handed alpha
Helix 43
43
D
117 127Right-handed alpha
Helix 44
44
D
141 150Right-handed alpha
Helix 45
45
D
168 175Right-handed alpha
Helix 46
46
D
184 187Right-handed 310
Helix 47
47
D
188 194Right-handed alpha
Helix 48
48
D
196 213Right-handed alpha
Helix 49
49
E
4 16Right-handed alpha
Helix 50
50
E
25 27Right-handed 310
Helix 51
51
E
28 39Right-handed alpha
Helix 52
52
E
52 64Right-handed alpha
Helix 53
53
E
76 87Right-handed alpha
Helix 54
54
E
97 107Right-handed alpha
Helix 55
55
E
117 127Right-handed alpha
Helix 56
56
E
141 150Right-handed alpha
Helix 57
57
E
168 174Right-handed alpha
Helix 58
58
E
184 187Right-handed 310
Helix 59
59
E
188 195Right-handed alpha
Helix 60
60
E
196 213Right-handed alpha
Helix 61
61
F
4 16Right-handed alpha
Helix 62
62
F
25 27Right-handed 310
Helix 63
63
F
28 39Right-handed alpha
Helix 64
64
F
52 64Right-handed alpha
Helix 65
65
F
76 87Right-handed alpha
Helix 66
66
F
97 107Right-handed alpha
Helix 67
67
F
117 127Right-handed alpha
Helix 68
68
F
141 150Right-handed alpha
Helix 69
69
F
168 174Right-handed alpha
Helix 70
70
F
184 187Right-handed 310
Helix 71
71
F
188 194Right-handed alpha
Helix 72
72
F
196 213Right-handed alpha
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There are 11 sheets in PDB entry 1VHC. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 112first strand
Strand 2
A
90 92parallel
Strand 3
A
68 72parallel
Strand 4
A
43 47parallel
Strand 5
A
17 21parallel
Strand 6
A
181 183parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 115first strand
Strand 2
A
131 134parallel
Strand 3
A
157 160parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 112first strand
Strand 2
B
90 92parallel
Strand 3
B
68 72parallel
Strand 4
B
43 47parallel
Strand 5
B
17 21parallel
Strand 6
B
181 183parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
114 115first strand
Strand 2
B
131 134parallel
Strand 3
B
157 160parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
111 112first strand
Strand 2
C
90 92parallel
Strand 3
C
68 72parallel
Strand 4
C
43 47parallel
Strand 5
C
17 21parallel
Strand 6
C
181 183parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
114 115first strand
Strand 2
C
131 134parallel
Strand 3
C
157 160parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
157 160first strand
Strand 2
D
131 134parallel
Strand 3
D
111 115parallel
Strand 4
D
90 93parallel
Strand 5
D
68 72parallel
Strand 6
D
43 47parallel
Strand 7
D
17 21parallel
Strand 8
D
181 183parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
111 112first strand
Strand 2
E
90 92parallel
Strand 3
E
68 72parallel
Strand 4
E
43 47parallel
Strand 5
E
17 21parallel
Strand 6
E
181 183parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
114 115first strand
Strand 2
E
131 134parallel
Strand 3
E
157 160parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
111 112first strand
Strand 2
F
90 92parallel
Strand 3
F
68 72parallel
Strand 4
F
43 47parallel
Strand 5
F
17 21parallel
Strand 6
F
181 183parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
114 115first strand
Strand 2
F
131 134parallel
Strand 3
F
157 160parallel
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