Analysis of interatomic Contacts of Structural Units in PDB entry:
1VHM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VHM entry

There are 2 chains in PDB entry 1VHM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 20PHE 178
B
 MET 19PHE 178
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1VHM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 37Right-handed alpha
Helix 2
2
A
41 57Right-handed alpha
Helix 3
3
A
91 101Right-handed alpha
Helix 4
4
A
151 171Right-handed alpha
Helix 5
5
A
172 172Right-handed 310
Helix 6
6
A
173 177Right-handed 310
Helix 7
7
B
20 37Right-handed alpha
Helix 8
8
B
41 57Right-handed alpha
Helix 9
9
B
91 101Right-handed alpha
Helix 10
10
B
108 112Right-handed 310
Helix 11
11
B
151 171Right-handed alpha
Helix 12
12
B
172 172Right-handed 310
Helix 13
13
B
173 177Right-handed 310
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There are 2 sheets in PDB entry 1VHM. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 88first strand
Strand 2
A
72 79anti-parallel
Strand 3
A
62 69anti-parallel
Strand 4
A
135 144anti-parallel
Strand 5
A
124 132anti-parallel
Strand 6
A
104 106anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 88first strand
Strand 2
B
72 80anti-parallel
Strand 3
B
62 69anti-parallel
Strand 4
B
135 144anti-parallel
Strand 5
B
124 132anti-parallel
Strand 6
B
104 106anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il