Analysis of interatomic Contacts of Structural Units in PDB entry:
1VHT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VHT entry

There are 3 chains in PDB entry 1VHT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0GLU 207
B
 SER 0GLU 207
C
 SER 0GLU 207
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 1VHT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 25Right-handed alpha
Helix 2
2
A
32 39Right-handed alpha
Helix 3
3
A
45 55Right-handed alpha
Helix 4
4
A
56 59Right-handed 310
Helix 5
5
A
66 76Right-handed alpha
Helix 6
6
A
77 103Right-handed alpha
Helix 7
7
A
119 124Right-handed 310
Helix 8
8
A
133 146Right-handed alpha
Helix 9
9
A
148 159Right-handed alpha
Helix 10
10
A
161 169Right-handed alpha
Helix 11
11
A
181 200Right-handed alpha
Helix 12
12
B
14 25Right-handed alpha
Helix 13
13
B
32 39Right-handed alpha
Helix 14
14
B
44 55Right-handed alpha
Helix 15
15
B
56 59Right-handed 310
Helix 16
16
B
66 76Right-handed alpha
Helix 17
17
B
77 103Right-handed alpha
Helix 18
18
B
119 124Right-handed 310
Helix 19
19
B
133 146Right-handed alpha
Helix 20
20
B
148 159Right-handed alpha
Helix 21
21
B
161 169Right-handed alpha
Helix 22
22
B
178 181Right-handed 310
Helix 23
23
B
182 200Right-handed alpha
Helix 24
24
C
14 24Right-handed alpha
Helix 25
25
C
32 39Right-handed alpha
Helix 26
26
C
44 53Right-handed alpha
Helix 27
27
C
83 103Right-handed alpha
Helix 28
28
C
119 124Right-handed 310
Helix 29
29
C
133 146Right-handed alpha
Helix 30
30
C
148 159Right-handed alpha
Helix 31
31
C
161 169Right-handed alpha
Helix 32
32
C
178 181Right-handed 310
Helix 33
33
C
182 200Right-handed alpha
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There are 3 sheets in PDB entry 1VHT. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 31first strand
Strand 2
A
107 111parallel
Strand 3
A
3 8parallel
Strand 4
A
126 131parallel
Strand 5
A
171 174parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 31first strand
Strand 2
B
107 111parallel
Strand 3
B
3 8parallel
Strand 4
B
126 131parallel
Strand 5
B
171 174parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
28 31first strand
Strand 2
C
107 111parallel
Strand 3
C
3 8parallel
Strand 4
C
126 131parallel
Strand 5
C
171 174parallel
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