Analysis of interatomic Contacts of Structural Units in PDB entry:
1VHY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VHY entry

There are 2 chains in PDB entry 1VHY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 3GLY 247
B
 ILE 3GLY 247
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 1VHY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 30Right-handed alpha
Helix 2
2
A
92 102Right-handed alpha
Helix 3
3
A
120 143Right-handed alpha
Helix 4
4
A
156 161Right-handed alpha
Helix 5
5
A
178 182Right-handed 310
Helix 6
6
A
201 211Right-handed alpha
Helix 7
7
A
224 240Right-handed alpha
Helix 8
8
A
241 245Right-handed 310
Helix 9
9
B
21 29Right-handed alpha
Helix 10
10
B
91 102Right-handed alpha
Helix 11
11
B
124 143Right-handed alpha
Helix 12
12
B
156 161Right-handed alpha
Helix 13
13
B
201 211Right-handed alpha
Helix 14
14
B
224 240Right-handed alpha
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There are 8 sheets in PDB entry 1VHY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 7first strand
Strand 2
A
39 43parallel
Strand 3
A
48 57anti-parallel
Strand 4
A
62 66anti-parallel
Strand 5
A
17 19anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 7first strand
Strand 2
A
39 43parallel
Strand 3
A
48 57anti-parallel
Strand 4
A
70 71anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 150first strand
Strand 2
A
106 111parallel
Strand 3
A
154 155parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 150first strand
Strand 2
A
106 111parallel
Strand 3
A
80 85parallel
Strand 4
A
190 194parallel
Strand 5
A
167 171parallel
Strand 6
A
214 216parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 7first strand
Strand 2
B
39 43parallel
Strand 3
B
48 53anti-parallel
Strand 4
B
63 66anti-parallel
Strand 5
B
17 19anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 7first strand
Strand 2
B
39 43parallel
Strand 3
B
48 53anti-parallel
Strand 4
B
70 71anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 150first strand
Strand 2
B
106 111parallel
Strand 3
B
154 155parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 150first strand
Strand 2
B
106 111parallel
Strand 3
B
80 85parallel
Strand 4
B
190 194parallel
Strand 5
B
167 171parallel
Strand 6
B
214 216parallel
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