Analysis of interatomic Contacts of Structural Units in PDB entry:
1VI1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VI1 entry

There are 2 chains in PDB entry 1VI1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0GLU 333
B
 SER 0GLU 328
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 1VI1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 28Right-handed alpha
Helix 2
2
A
38 44Right-handed alpha
Helix 3
3
A
67 75Right-handed alpha
Helix 4
4
A
78 89Right-handed alpha
Helix 5
5
A
100 111Right-handed alpha
Helix 6
6
A
147 165Right-handed alpha
Helix 7
7
A
186 198Right-handed alpha
Helix 8
8
A
211 216Right-handed 310
Helix 9
9
A
224 251Right-handed alpha
Helix 10
10
A
263 275Right-handed alpha
Helix 11
11
A
276 279Right-handed 310
Helix 12
12
A
299 316Right-handed alpha
Helix 13
13
A
317 326Right-handed alpha
Helix 14
14
A
327 332Right-handed alpha
Helix 15
15
B
14 28Right-handed alpha
Helix 16
16
B
38 44Right-handed alpha
Helix 17
17
B
67 75Right-handed alpha
Helix 18
18
B
78 89Right-handed alpha
Helix 19
19
B
100 112Right-handed alpha
Helix 20
20
B
147 165Right-handed alpha
Helix 21
21
B
186 198Right-handed alpha
Helix 22
22
B
211 213Right-handed 310
Helix 23
23
B
224 251Right-handed alpha
Helix 24
24
B
266 275Right-handed alpha
Helix 25
25
B
276 280Right-handed 310
Helix 26
26
B
299 316Right-handed alpha
Helix 27
27
B
317 327Right-handed alpha
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There are 4 sheets in PDB entry 1VI1. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 57first strand
Strand 2
A
31 37parallel
Strand 3
A
1 6parallel
Strand 4
A
94 97parallel
Strand 5
A
291 293parallel
Strand 6
A
282 285anti-parallel
Strand 7
A
122 124anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 127first strand
Strand 2
A
135 138anti-parallel
Strand 3
A
220 222parallel
Strand 4
A
172 177parallel
Strand 5
A
203 209parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 57first strand
Strand 2
B
31 37parallel
Strand 3
B
1 6parallel
Strand 4
B
94 97parallel
Strand 5
B
291 293parallel
Strand 6
B
282 285anti-parallel
Strand 7
B
122 124anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
126 127first strand
Strand 2
B
135 138anti-parallel
Strand 3
B
220 222parallel
Strand 4
B
172 177parallel
Strand 5
B
203 209parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il