Analysis of interatomic Contacts of Structural Units in PDB entry:
1VI6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VI6 entry

There are 4 chains in PDB entry 1VI6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 5LEU 197
B
 GLU 5LEU 197
C
 GLU 5GLU 198
D
 GLU 5LEU 197
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 1VI6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 19Right-handed alpha
Helix 2
2
A
31 33Right-handed 310
Helix 3
3
A
47 63Right-handed alpha
Helix 4
4
A
64 65Right-handed 310
Helix 5
5
A
66 68Right-handed 310
Helix 6
6
A
76 78Right-handed 310
Helix 7
7
A
79 91Right-handed alpha
Helix 8
8
A
126 136Right-handed alpha
Helix 9
9
A
163 183Right-handed alpha
Helix 10
10
A
189 194Right-handed alpha
Helix 11
11
B
11 19Right-handed alpha
Helix 12
12
B
31 33Right-handed 310
Helix 13
13
B
47 63Right-handed alpha
Helix 14
14
B
64 65Right-handed 310
Helix 15
15
B
66 68Right-handed 310
Helix 16
16
B
76 78Right-handed 310
Helix 17
17
B
79 91Right-handed alpha
Helix 18
18
B
126 136Right-handed alpha
Helix 19
19
B
163 183Right-handed alpha
Helix 20
20
B
190 194Right-handed 310
Helix 21
21
C
11 19Right-handed alpha
Helix 22
22
C
31 33Right-handed 310
Helix 23
23
C
47 63Right-handed alpha
Helix 24
24
C
64 65Right-handed 310
Helix 25
25
C
66 68Right-handed 310
Helix 26
26
C
76 78Right-handed 310
Helix 27
27
C
79 91Right-handed alpha
Helix 28
28
C
126 136Right-handed alpha
Helix 29
29
C
163 183Right-handed alpha
Helix 30
30
C
189 194Right-handed alpha
Helix 31
31
D
11 19Right-handed alpha
Helix 32
32
D
31 33Right-handed 310
Helix 33
33
D
47 63Right-handed alpha
Helix 34
34
D
64 65Right-handed 310
Helix 35
35
D
66 68Right-handed 310
Helix 36
36
D
76 78Right-handed 310
Helix 37
37
D
79 91Right-handed alpha
Helix 38
38
D
126 136Right-handed alpha
Helix 39
39
D
163 183Right-handed alpha
Helix 40
40
D
189 194Right-handed alpha
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There are 8 sheets in PDB entry 1VI6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 38first strand
Strand 2
A
44 46anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 96first strand
Strand 2
A
70 74parallel
Strand 3
A
117 120parallel
Strand 4
A
140 144parallel
Strand 5
A
155 158parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 38first strand
Strand 2
B
44 46anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 96first strand
Strand 2
B
70 74parallel
Strand 3
B
117 120parallel
Strand 4
B
140 144parallel
Strand 5
B
155 158parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
35 38first strand
Strand 2
C
44 46anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
93 96first strand
Strand 2
C
70 74parallel
Strand 3
C
117 120parallel
Strand 4
C
140 144parallel
Strand 5
C
155 158parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
35 38first strand
Strand 2
D
44 46anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
93 96first strand
Strand 2
D
70 74parallel
Strand 3
D
117 120parallel
Strand 4
D
140 144parallel
Strand 5
D
155 158parallel
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