Analysis of interatomic Contacts of Structural Units in PDB entry:
1VIA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VIA entry

There are 2 chains in PDB entry 1VIA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 5LYS 165
B
 SER 2GLU 166
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 1VIA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 29Right-handed alpha
Helix 2
2
A
35 44Right-handed alpha
Helix 3
3
A
46 55Right-handed alpha
Helix 4
4
A
55 71Right-handed alpha
Helix 5
5
A
83 87Right-handed 310
Helix 6
6
A
89 94Right-handed 310
Helix 7
7
A
102 107Right-handed alpha
Helix 8
8
A
111 115Right-handed 310
Helix 9
9
A
123 142Right-handed alpha
Helix 10
10
A
152 165Right-handed alpha
Helix 11
11
B
16 29Right-handed alpha
Helix 12
12
B
35 44Right-handed alpha
Helix 13
13
B
46 73Right-handed alpha
Helix 14
14
B
81 87Right-handed 310
Helix 15
15
B
89 94Right-handed 310
Helix 16
16
B
102 107Right-handed alpha
Helix 17
17
B
123 142Right-handed alpha
Helix 18
18
B
152 165Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 1VIA. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 34first strand
Strand 2
A
76 79parallel
Strand 3
A
7 10parallel
Strand 4
A
95 100parallel
Strand 5
A
144 147parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 34first strand
Strand 2
B
76 79parallel
Strand 3
B
7 10parallel
Strand 4
B
95 100parallel
Strand 5
B
144 147parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il