Analysis of interatomic Contacts of Structural Units in PDB entry:
1VID


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VID entry

There is 1 chain in PDB entry 1VID (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 4SER 216
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 8 helices in PDB entry 1VID. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 16Right-handed alpha
Helix 2
2
A
22 35Right-handed alpha
Helix 3
3
A
43 57Right-handed alpha
Helix 4
4
A
71 79Right-handed alpha
Helix 5
5
A
93 106Right-handed alpha
Helix 6
6
A
119 130Right-handed alpha
Helix 7
7
A
144 156Right-handed 310
Helix 8
8
A
177 185Right-handed alpha
Back to top of page

There is 1 sheet ( A) in PDB entry 1VID.

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 197first strand
Strand 2
A
204 212anti-parallel
Strand 3
A
165 168anti-parallel
Strand 4
A
137 140parallel
Strand 5
A
61 65parallel
Strand 6
A
85 90parallel
Strand 7
A
112 116parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il