Analysis of interatomic Contacts of Structural Units in PDB entry:
1VIM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VIM entry

There are 4 chains in PDB entry 1VIM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -5GLY 186
B
 HIS -2GLY 185
C
 GLY -4GLY 185
D
 GLY -4GLY 185
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 1VIM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-2 19Right-handed alpha
Helix 2
2
A
20 34Right-handed alpha
Helix 3
3
A
42 59Right-handed alpha
Helix 4
4
A
89 103Right-handed alpha
Helix 5
5
A
115 121Right-handed alpha
Helix 6
6
A
135 143Right-handed alpha
Helix 7
7
A
146 169Right-handed alpha
Helix 8
8
A
171 179Right-handed alpha
Helix 9
9
B
-2 19Right-handed alpha
Helix 10
10
B
20 34Right-handed alpha
Helix 11
11
B
43 59Right-handed alpha
Helix 12
12
B
89 103Right-handed alpha
Helix 13
13
B
115 121Right-handed alpha
Helix 14
14
B
135 143Right-handed alpha
Helix 15
15
B
146 169Right-handed alpha
Helix 16
16
B
171 177Right-handed alpha
Helix 17
17
C
-2 19Right-handed alpha
Helix 18
18
C
20 34Right-handed alpha
Helix 19
19
C
42 60Right-handed alpha
Helix 20
20
C
89 103Right-handed alpha
Helix 21
21
C
115 121Right-handed alpha
Helix 22
22
C
135 143Right-handed alpha
Helix 23
23
C
146 169Right-handed alpha
Helix 24
24
C
171 179Right-handed alpha
Helix 25
25
D
-2 19Right-handed alpha
Helix 26
26
D
20 34Right-handed alpha
Helix 27
27
D
43 59Right-handed alpha
Helix 28
28
D
89 103Right-handed alpha
Helix 29
29
D
115 121Right-handed alpha
Helix 30
30
D
135 143Right-handed alpha
Helix 31
31
D
146 168Right-handed alpha
Helix 32
32
D
171 177Right-handed alpha
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There are 4 sheets in PDB entry 1VIM. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 65first strand
Strand 2
A
37 40parallel
Strand 3
A
79 83parallel
Strand 4
A
105 110parallel
Strand 5
A
123 126parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 65first strand
Strand 2
B
37 41parallel
Strand 3
B
79 83parallel
Strand 4
B
105 110parallel
Strand 5
B
123 126parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
63 65first strand
Strand 2
C
37 41parallel
Strand 3
C
79 83parallel
Strand 4
C
105 110parallel
Strand 5
C
123 126parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
63 65first strand
Strand 2
D
37 41parallel
Strand 3
D
79 83parallel
Strand 4
D
105 110parallel
Strand 5
D
123 126parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il