Analysis of interatomic Contacts of Structural Units in PDB entry:
1VIS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VIS entry

There is 1 chain in PDB entry 1VIS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0GLU 313
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 1VIS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 20Right-handed 310
Helix 2
2
A
61 65Right-handed 310
Helix 3
3
A
66 72Right-handed 310
Helix 4
4
A
73 88Right-handed alpha
Helix 5
5
A
110 127Right-handed alpha
Helix 6
6
A
132 149Right-handed alpha
Helix 7
7
A
153 162Right-handed alpha
Helix 8
8
A
176 185Right-handed alpha
Helix 9
9
A
199 209Right-handed alpha
Helix 10
10
A
212 229Right-handed alpha
Helix 11
11
A
232 248Right-handed alpha
Helix 12
12
A
249 251Right-handed 310
Helix 13
13
A
254 268Right-handed alpha
Helix 14
14
A
290 300Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 1VIS. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1 12first strand
Strand 2
A
22 38anti-parallel
Strand 3
A
95 101anti-parallel
Strand 4
A
43 48parallel
Strand 5
A
53 58anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1 12first strand
Strand 2
A
22 38anti-parallel
Strand 3
A
164 168anti-parallel
Strand 4
A
171 174anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 274first strand
Strand 2
A
280 285anti-parallel
Strand 3
A
188 194anti-parallel
Strand 4
A
304 308anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il