Analysis of interatomic Contacts of Structural Units in PDB entry:
1VIT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VIT entry

There are 7 chains in PDB entry 1VIT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
L
 THR 1ARG 15
H
 ILE 16SER 247
I
 HIS 51GLN 65
M
 THR 1ARG 15
F
 ILE 16THR 149
G
 SER 149SER 247
J
 HIS 51GLN 65
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 1VIT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
L
8 10Right-handed 310
Helix 2
2
L
14 14Right-handed alpha
Helix 3
3
H
56 58Right-handed 310
Helix 4
4
H
126 129Right-handed alpha
Helix 5
5
H
165 169Right-handed alpha
Helix 6
6
H
232 242Right-handed 310
Helix 7
7
M
8 10Right-handed 310
Helix 8
8
M
14 14Right-handed alpha
Helix 9
9
F
56 58Right-handed 310
Helix 10
10
F
60 60Right-handed 310
Helix 11
11
F
61 63Right-handed 310
Helix 12
12
F
128 129Right-handed alpha
Helix 13
13
G
165 171Right-handed alpha
Helix 14
14
G
232 242Right-handed 310
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There are 8 sheets in PDB entry 1VIT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
81 83first strand
Strand 2
H
64 68anti-parallel
Strand 3
H
30 35anti-parallel
Strand 4
H
40 45anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
51 54first strand
Strand 2
H
104 107anti-parallel
Strand 3
H
88 90anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
135 139first strand
Strand 2
H
157 161anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
180 183first strand
Strand 2
H
226 230anti-parallel
Strand 3
H
207 216anti-parallel
Strand 4
H
198 202anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
81 84first strand
Strand 2
F
64 68anti-parallel
Strand 3
F
31 35anti-parallel
Strand 4
F
39 44anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
51 54first strand
Strand 2
F
104 107anti-parallel
Strand 3
F
88 90anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
135 140first strand
Strand 2
G
156 161anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
180 183first strand
Strand 2
G
226 230anti-parallel
Strand 3
G
207 216anti-parallel
Strand 4
G
198 202anti-parallel
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