Analysis of interatomic Contacts of Structural Units in PDB entry:
1VIW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VIW entry

There are 2 chains in PDB entry 1VIW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2LEU 471
B
 ALA 1ILE 205
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 1VIW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 30Right-handed alpha
Helix 2
2
A
33 35Right-handed 310
Helix 3
3
A
56 60Right-handed 310
Helix 4
4
A
74 86Right-handed alpha
Helix 5
5
A
127 129Right-handed 310
Helix 6
6
A
142 145Right-handed alpha
Helix 7
7
A
161 176Right-handed alpha
Helix 8
8
A
187 189Right-handed 310
Helix 9
9
A
192 201Right-handed alpha
Helix 10
10
A
207 209Right-handed 310
Helix 11
11
A
233 236Right-handed 310
Helix 12
12
A
245 256Right-handed alpha
Helix 13
13
A
261 266Right-handed 310
Helix 14
14
A
269 271Right-handed 310
Helix 15
15
A
276 278Right-handed 310
Helix 16
16
A
299 314Right-handed 310
Helix 17
17
A
361 363Right-handed 310
Helix 18
18
A
365 377Right-handed alpha
Helix 19
19
A
398 400Right-handed 310
Helix 20
20
A
467 469Right-handed 310
Helix 21
21
B
13 15Right-handed 310
Helix 22
22
B
125 127Right-handed 310
Helix 23
23
B
186 189Right-handed 310
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There are 7 sheets in PDB entry 1VIW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 42first strand
Strand 2
A
90 95parallel
Strand 3
A
181 184parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 397first strand
Strand 2
A
401 406anti-parallel
Strand 3
A
463 466anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 8first strand
Strand 2
B
192 201anti-parallel
Strand 3
B
63 71anti-parallel
Strand 4
B
133 138anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 19first strand
Strand 2
B
42 45anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 24first strand
Strand 2
B
30 32anti-parallel
Strand 3
B
193 195anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
175 179first strand
Strand 2
B
81 88anti-parallel
Strand 3
B
97 103anti-parallel
Strand 4
B
108 111anti-parallel
Strand 5
B
120 122anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 151first strand
Strand 2
B
158 164anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il