Analysis of interatomic Contacts of Structural Units in PDB entry:
1VIX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VIX entry

There are 2 chains in PDB entry 1VIX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET -1GLU 409
B
 MET -1LYS 408
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 1VIX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
0 14Right-handed alpha
Helix 2
2
A
29 44Right-handed alpha
Helix 3
3
A
117 123Right-handed 310
Helix 4
4
A
138 158Right-handed alpha
Helix 5
5
A
172 176Right-handed 310
Helix 6
6
A
183 188Right-handed alpha
Helix 7
7
A
223 227Right-handed 310
Helix 8
8
A
233 245Right-handed alpha
Helix 9
9
A
283 303Right-handed alpha
Helix 10
10
A
322 328Right-handed alpha
Helix 11
11
A
330 343Right-handed alpha
Helix 12
12
A
356 362Right-handed alpha
Helix 13
13
A
387 407Right-handed alpha
Helix 14
14
B
0 13Right-handed alpha
Helix 15
15
B
29 46Right-handed alpha
Helix 16
16
B
117 123Right-handed 310
Helix 17
17
B
138 158Right-handed alpha
Helix 18
18
B
172 176Right-handed 310
Helix 19
19
B
183 188Right-handed alpha
Helix 20
20
B
223 227Right-handed 310
Helix 21
21
B
233 245Right-handed alpha
Helix 22
22
B
250 254Right-handed 310
Helix 23
23
B
283 303Right-handed alpha
Helix 24
24
B
322 328Right-handed alpha
Helix 25
25
B
330 343Right-handed alpha
Helix 26
26
B
356 363Right-handed alpha
Helix 27
27
B
387 407Right-handed alpha
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There are 7 sheets in PDB entry 1VIX. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 52first strand
Strand 2
A
58 62anti-parallel
Strand 3
A
165 170anti-parallel
Strand 4
A
73 78parallel
Strand 5
A
191 195parallel
Strand 6
A
370 371parallel
Strand 7
A
202 204anti-parallel
Strand 8
A
348 349parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 95first strand
Strand 2
A
128 130anti-parallel
Strand 3
A
384 386anti-parallel
Strand 4
A
375 376anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 105first strand
Strand 2
A
110 112anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 319first strand
Strand 2
A
209 218anti-parallel
Strand 3
A
272 281anti-parallel
Strand 4
A
260 269anti-parallel
Strand 5
B
260 269anti-parallel
Strand 6
B
272 281anti-parallel
Strand 7
B
209 218anti-parallel
Strand 8
B
310 319anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 52first strand
Strand 2
B
58 62anti-parallel
Strand 3
B
165 170anti-parallel
Strand 4
B
73 78parallel
Strand 5
B
191 195parallel
Strand 6
B
370 371parallel
Strand 7
B
202 204anti-parallel
Strand 8
B
348 349parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 95first strand
Strand 2
B
128 130anti-parallel
Strand 3
B
384 386anti-parallel
Strand 4
B
375 376anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
103 104first strand
Strand 2
B
111 112anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il