Analysis of interatomic Contacts of Structural Units in PDB entry:
1VJ0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1VJ0 entry

There are 4 chains in PDB entry 1VJ0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 2	GLU 367
B	LEU 4	GLU 367
C	LEU 4	GLU 367
D	GLY 3	GLU 367

There are 55 helices in PDB entry 1VJ0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	43	51	Right-handed alpha
Helix 2	2	A	103	108	Right-handed alpha
Helix 3	3	A	111	115	Right-handed 310
Helix 4	4	A	157	165	Right-handed alpha
Helix 5	5	A	166	177	Right-handed alpha
Helix 6	6	A	193	206	Right-handed alpha
Helix 7	7	A	217	227	Right-handed alpha
Helix 8	8	A	239	251	Right-handed alpha
Helix 9	9	A	267	275	Right-handed alpha
Helix 10	10	A	297	302	Right-handed alpha
Helix 11	11	A	316	329	Right-handed alpha
Helix 12	12	A	330	335	Right-handed alpha
Helix 13	13	A	336	338	Right-handed 310
Helix 14	14	A	346	357	Right-handed alpha
Helix 15	15	B	43	51	Right-handed alpha
Helix 16	16	B	103	108	Right-handed alpha
Helix 17	17	B	111	115	Right-handed 310
Helix 18	18	B	157	165	Right-handed alpha
Helix 19	19	B	166	177	Right-handed alpha
Helix 20	20	B	193	206	Right-handed alpha
Helix 21	21	B	217	227	Right-handed alpha
Helix 22	22	B	239	251	Right-handed alpha
Helix 23	23	B	267	275	Right-handed alpha
Helix 24	24	B	297	302	Right-handed alpha
Helix 25	25	B	316	329	Right-handed alpha
Helix 26	26	B	330	335	Right-handed alpha
Helix 27	27	B	336	338	Right-handed 310
Helix 28	28	B	346	356	Right-handed alpha
Helix 29	29	C	43	51	Right-handed alpha
Helix 30	30	C	103	108	Right-handed alpha
Helix 31	31	C	111	115	Right-handed 310
Helix 32	32	C	157	165	Right-handed alpha
Helix 33	33	C	166	177	Right-handed alpha
Helix 34	34	C	193	207	Right-handed alpha
Helix 35	35	C	217	227	Right-handed alpha
Helix 36	36	C	239	251	Right-handed alpha
Helix 37	37	C	267	275	Right-handed alpha
Helix 38	38	C	297	302	Right-handed alpha
Helix 39	39	C	316	329	Right-handed alpha
Helix 40	40	C	330	336	Right-handed alpha
Helix 41	41	C	346	356	Right-handed alpha
Helix 42	42	D	43	51	Right-handed alpha
Helix 43	43	D	103	108	Right-handed alpha
Helix 44	44	D	111	115	Right-handed 310
Helix 45	45	D	157	165	Right-handed alpha
Helix 46	46	D	166	177	Right-handed alpha
Helix 47	47	D	193	207	Right-handed alpha
Helix 48	48	D	217	227	Right-handed alpha
Helix 49	49	D	239	251	Right-handed alpha
Helix 50	50	D	267	275	Right-handed alpha
Helix 51	51	D	297	302	Right-handed alpha
Helix 52	52	D	316	329	Right-handed alpha
Helix 53	53	D	330	335	Right-handed alpha
Helix 54	54	D	336	338	Right-handed 310
Helix 55	55	D	346	356	Right-handed alpha

There are 20 sheets in PDB entry 1VJ0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	10	first strand
Strand 2	A	19	25	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	140	143	first strand
Strand 2	A	33	42	anti-parallel
Strand 3	A	66	74	anti-parallel
Strand 4	A	91	94	anti-parallel
Strand 5	A	149	152	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	140	143	first strand
Strand 2	A	33	42	anti-parallel
Strand 3	A	362	365	anti-parallel
Strand 4	A	340	343	parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	98	first strand
Strand 2	A	119	120	anti-parallel

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There are 12 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	231	234	first strand
Strand 2	A	210	215	parallel
Strand 3	A	186	190	parallel
Strand 4	A	256	261	parallel
Strand 5	A	276	284	parallel
Strand 6	A	308	311	parallel
Strand 7	C	308	311	anti-parallel
Strand 8	C	276	284	parallel
Strand 9	C	256	261	parallel
Strand 10	C	186	190	parallel
Strand 11	C	210	215	parallel
Strand 12	C	231	234	parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	294	296	first strand
Strand 2	C	294	296	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	19	24	first strand
Strand 2	B	5	11	anti-parallel
Strand 3	B	61	62	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	140	143	first strand
Strand 2	B	33	42	anti-parallel
Strand 3	B	67	74	anti-parallel
Strand 4	B	91	94	anti-parallel
Strand 5	B	149	152	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	140	143	first strand
Strand 2	B	33	42	anti-parallel
Strand 3	B	362	365	anti-parallel
Strand 4	B	340	343	parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	98	first strand
Strand 2	B	119	120	anti-parallel

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There are 12 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	234	first strand
Strand 2	B	210	215	parallel
Strand 3	B	186	190	parallel
Strand 4	B	256	261	parallel
Strand 5	B	276	284	parallel
Strand 6	B	308	311	parallel
Strand 7	D	308	311	anti-parallel
Strand 8	D	276	284	parallel
Strand 9	D	256	261	parallel
Strand 10	D	186	190	parallel
Strand 11	D	210	215	parallel
Strand 12	D	231	234	parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	294	296	first strand
Strand 2	D	294	296	anti-parallel

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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	19	24	first strand
Strand 2	C	5	11	anti-parallel
Strand 3	C	61	62	anti-parallel

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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	140	143	first strand
Strand 2	C	33	42	anti-parallel
Strand 3	C	66	74	anti-parallel
Strand 4	C	91	94	anti-parallel
Strand 5	C	149	152	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	140	143	first strand
Strand 2	C	33	42	anti-parallel
Strand 3	C	361	365	anti-parallel
Strand 4	C	338	343	parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	97	98	first strand
Strand 2	C	119	120	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	10	first strand
Strand 2	D	19	25	anti-parallel

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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	140	143	first strand
Strand 2	D	33	42	anti-parallel
Strand 3	D	66	74	anti-parallel
Strand 4	D	91	94	anti-parallel
Strand 5	D	149	152	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	140	143	first strand
Strand 2	D	33	42	anti-parallel
Strand 3	D	362	365	anti-parallel
Strand 4	D	340	343	parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	97	98	first strand
Strand 2	D	119	120	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1VJ0

Analysis of interatomic Contacts of Structural Units in PDB entry:
1VJ0