Analysis of interatomic Contacts of Structural Units in PDB entry:
1VJ1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VJ1 entry

There is 1 chain in PDB entry 1VJ1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -1LEU 351
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 1VJ1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 21Right-handed 310
Helix 2
2
A
49 57Right-handed 310
Helix 3
3
A
112 114Right-handed 310
Helix 4
4
A
118 123Right-handed 310
Helix 5
5
A
125 131Right-handed 310
Helix 6
6
A
134 148Right-handed alpha
Helix 7
7
A
167 169Right-handed 310
Helix 8
8
A
170 178Right-handed alpha
Helix 9
9
A
189 200Right-handed alpha
Helix 10
10
A
212 221Right-handed alpha
Helix 11
11
A
233 242Right-handed alpha
Helix 12
12
A
270 280Right-handed alpha
Helix 13
13
A
288 294Right-handed 310
Helix 14
14
A
295 309Right-handed alpha
Helix 15
15
A
324 334Right-handed alpha
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There are 4 sheets in PDB entry 1VJ1. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
0 8first strand
Strand 2
A
23 31anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 110first strand
Strand 2
A
38 48anti-parallel
Strand 3
A
75 85anti-parallel
Strand 4
A
95 102anti-parallel
Strand 5
A
115 117anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 110first strand
Strand 2
A
38 48anti-parallel
Strand 3
A
340 344anti-parallel
Strand 4
A
316 320parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 207first strand
Strand 2
A
182 187parallel
Strand 3
A
157 160parallel
Strand 4
A
225 230parallel
Strand 5
A
244 252parallel
Strand 6
A
283 286parallel
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