Analysis of interatomic Contacts of Structural Units in PDB entry:
1VJB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VJB entry

There are 2 chains in PDB entry 1VJB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 234GLU 441
B
 PRO 233GLY 442
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1VJB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
235 245Right-handed alpha
Helix 2
2
A
260 284Right-handed alpha
Helix 3
3
A
293 318Right-handed alpha
Helix 4
4
A
334 341Right-handed alpha
Helix 5
5
A
342 359Right-handed alpha
Helix 6
6
A
362 376Right-handed alpha
Helix 7
7
A
384 407Right-handed alpha
Helix 8
8
A
412 420Right-handed alpha
Helix 9
9
A
420 438Right-handed alpha
Helix 10
10
B
235 245Right-handed alpha
Helix 11
11
B
260 284Right-handed alpha
Helix 12
12
B
293 317Right-handed alpha
Helix 13
13
B
333 341Right-handed alpha
Helix 14
14
B
342 358Right-handed alpha
Helix 15
15
B
362 376Right-handed alpha
Helix 16
16
B
384 407Right-handed alpha
Helix 17
17
B
412 419Right-handed alpha
Helix 18
18
B
420 441Right-handed alpha
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There are 2 sheets in PDB entry 1VJB. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 327first strand
Strand 2
A
330 333anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
324 327first strand
Strand 2
B
330 332anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il