Analysis of interatomic Contacts of Structural Units in PDB entry:
1VJI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VJI entry

There is 1 chain in PDB entry 1VJI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 9GLU 369
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 1VJI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 14Right-handed 310
Helix 2
2
A
37 41Right-handed 310
Helix 3
3
A
43 53Right-handed alpha
Helix 4
4
A
82 99Right-handed alpha
Helix 5
5
A
115 123Right-handed 310
Helix 6
6
A
154 157Right-handed 310
Helix 7
7
A
158 176Right-handed alpha
Helix 8
8
A
188 195Right-handed alpha
Helix 9
9
A
208 228Right-handed alpha
Helix 10
10
A
249 261Right-handed alpha
Helix 11
11
A
288 296Right-handed alpha
Helix 12
12
A
307 317Right-handed alpha
Helix 13
13
A
326 332Right-handed alpha
Helix 14
14
A
334 342Right-handed alpha
Helix 15
15
A
349 353Right-handed 310
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There are 3 sheets in PDB entry 1VJI. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 18first strand
Strand 2
A
21 23anti-parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 66first strand
Strand 2
A
102 108parallel
Strand 3
A
179 184parallel
Strand 4
A
232 236parallel
Strand 5
A
268 272parallel
Strand 6
A
299 303parallel
Strand 7
A
322 325parallel
Strand 8
A
27 29parallel
Strand 9
A
59 61parallel
Strand 10
A
102 108parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 127first strand
Strand 2
A
151 152parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il