Analysis of interatomic Contacts of Structural Units in PDB entry:
1VJN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VJN entry

There are 2 chains in PDB entry 1VJN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0GLN 208
B
 HIS 0VAL 207
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 7 helices in PDB entry 1VJN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
51 56Right-handed 310
Helix 2
2
A
117 125Right-handed alpha
Helix 3
3
A
141 152Right-handed alpha
Helix 4
4
A
174 179Right-handed alpha
Helix 5
5
B
117 125Right-handed alpha
Helix 6
6
B
141 152Right-handed alpha
Helix 7
7
B
174 179Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 1VJN. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 63first strand
Strand 2
A
40 42parallel
Strand 3
A
18 22parallel
Strand 4
A
10 15anti-parallel
Strand 5
A
1 7anti-parallel
Strand 6
A
190 193anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 71first strand
Strand 2
A
74 82anti-parallel
Strand 3
A
94 101anti-parallel
Strand 4
A
104 108anti-parallel
Strand 5
A
129 133parallel
Strand 6
A
156 160parallel
Strand 7
A
201 204parallel
Strand 8
A
185 186parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 63first strand
Strand 2
B
40 42parallel
Strand 3
B
18 22parallel
Strand 4
B
10 15anti-parallel
Strand 5
B
1 7anti-parallel
Strand 6
B
190 193anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 71first strand
Strand 2
B
74 80anti-parallel
Strand 3
B
95 101anti-parallel
Strand 4
B
104 108anti-parallel
Strand 5
B
129 133parallel
Strand 6
B
156 160parallel
Strand 7
B
201 204parallel
Strand 8
B
185 186parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il