Analysis of interatomic Contacts of Structural Units in PDB entry:
1VJO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VJO entry

There is 1 chain in PDB entry 1VJO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 5ARG 381
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 1VJO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
34 42Right-handed alpha
Helix 2
2
A
50 69Right-handed alpha
Helix 3
3
A
81 94Right-handed alpha
Helix 4
4
A
106 119Right-handed alpha
Helix 5
5
A
135 147Right-handed alpha
Helix 6
6
A
168 177Right-handed alpha
Helix 7
7
A
223 232Right-handed alpha
Helix 8
8
A
243 252Right-handed alpha
Helix 9
9
A
262 280Right-handed alpha
Helix 10
10
A
280 302Right-handed alpha
Helix 11
11
A
309 313Right-handed 310
Helix 12
12
A
327 340Right-handed alpha
Helix 13
13
A
347 351Right-handed 310
Helix 14
14
A
360 364Right-handed 310
Helix 15
15
A
365 381Right-handed alpha
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There are 3 sheets in PDB entry 1VJO. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 25first strand
Strand 2
A
341 342parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 78first strand
Strand 2
A
218 222anti-parallel
Strand 3
A
202 204anti-parallel
Strand 4
A
179 183parallel
Strand 5
A
150 154parallel
Strand 6
A
99 104parallel
Strand 7
A
122 127parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 321first strand
Strand 2
A
354 358anti-parallel
Strand 3
A
344 345anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il