Analysis of interatomic Contacts of Structural Units in PDB entry:
1VJR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VJR entry

There is 1 chain in PDB entry 1VJR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -1GLN 259
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1VJR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
0 5Right-handed 310
Helix 2
2
A
25 36Right-handed alpha
Helix 3
3
A
50 61Right-handed alpha
Helix 4
4
A
66 68Right-handed 310
Helix 5
5
A
73 86Right-handed alpha
Helix 6
6
A
95 105Right-handed alpha
Helix 7
7
A
126 138Right-handed alpha
Helix 8
8
A
161 174Right-handed alpha
Helix 9
9
A
186 197Right-handed alpha
Helix 10
10
A
199 201Right-handed 310
Helix 11
11
A
209 221Right-handed alpha
Helix 12
12
A
233 240Right-handed alpha
Helix 13
13
A
250 259Right-handed alpha
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There are 4 sheets in PDB entry 1VJR. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 72first strand
Strand 2
A
39 44parallel
Strand 3
A
7 10parallel
Strand 4
A
203 207parallel
Strand 5
A
223 227parallel
Strand 6
A
246 248parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 18first strand
Strand 2
A
21 22anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 109first strand
Strand 2
A
89 93parallel
Strand 3
A
116 119parallel
Strand 4
A
142 145parallel
Strand 5
A
179 180parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 152first strand
Strand 2
A
159 160anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il