Analysis of interatomic Contacts of Structural Units in PDB entry:
1VJT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VJT entry

There is 1 chain in PDB entry 1VJT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -1GLU 469
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 1VJT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 24Right-handed alpha
Helix 2
2
A
40 59Right-handed alpha
Helix 3
3
A
69 75Right-handed alpha
Helix 4
4
A
94 109Right-handed alpha
Helix 5
5
A
132 150Right-handed alpha
Helix 6
6
A
161 173Right-handed alpha
Helix 7
7
A
182 185Right-handed 310
Helix 8
8
A
186 194Right-handed alpha
Helix 9
9
A
197 199Right-handed 310
Helix 10
10
A
224 235Right-handed alpha
Helix 11
11
A
236 239Right-handed 310
Helix 12
12
A
250 261Right-handed alpha
Helix 13
13
A
266 269Right-handed 310
Helix 14
14
A
273 277Right-handed 310
Helix 15
15
A
279 288Right-handed alpha
Helix 16
16
A
297 323Right-handed alpha
Helix 17
17
A
327 332Right-handed alpha
Helix 18
18
A
345 356Right-handed alpha
Helix 19
19
A
401 408Right-handed alpha
Helix 20
20
A
408 426Right-handed alpha
Helix 21
21
A
427 437Right-handed alpha
Helix 22
22
A
443 456Right-handed alpha
Helix 23
23
A
457 459Right-handed 310
Helix 24
24
A
460 467Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 1VJT. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 67first strand
Strand 2
A
32 37parallel
Strand 3
A
1 6parallel
Strand 4
A
79 82parallel
Strand 5
A
154 157parallel
Strand 6
A
177 179parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 208first strand
Strand 2
A
211 219anti-parallel
Strand 3
A
222 223anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 208first strand
Strand 2
A
211 219anti-parallel
Strand 3
A
264 265anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 366first strand
Strand 2
A
379 387anti-parallel
Strand 3
A
390 393anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il