Analysis of interatomic Contacts of Structural Units in PDB entry:
1VJU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VJU entry

There are 2 chains in PDB entry 1VJU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 8VAL 309
B
 HIS 6VAL 309
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 1VJU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 36Right-handed alpha
Helix 2
2
A
146 162Right-handed alpha
Helix 3
3
A
163 165Right-handed 310
Helix 4
4
A
167 180Right-handed alpha
Helix 5
5
A
183 186Right-handed 310
Helix 6
6
A
203 230Right-handed alpha
Helix 7
7
A
235 256Right-handed alpha
Helix 8
8
A
257 266Right-handed alpha
Helix 9
9
A
269 274Right-handed alpha
Helix 10
10
A
275 277Right-handed 310
Helix 11
11
A
293 301Right-handed alpha
Helix 12
12
A
301 306Right-handed alpha
Helix 13
13
B
6 36Right-handed alpha
Helix 14
14
B
146 162Right-handed alpha
Helix 15
15
B
163 165Right-handed 310
Helix 16
16
B
167 180Right-handed alpha
Helix 17
17
B
183 186Right-handed 310
Helix 18
18
B
203 230Right-handed alpha
Helix 19
19
B
235 256Right-handed alpha
Helix 20
20
B
257 266Right-handed alpha
Helix 21
21
B
269 274Right-handed alpha
Helix 22
22
B
275 277Right-handed 310
Helix 23
23
B
293 301Right-handed alpha
Helix 24
24
B
301 306Right-handed alpha
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There are 4 sheets in PDB entry 1VJU. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 47first strand
Strand 2
A
51 59anti-parallel
Strand 3
A
64 77anti-parallel
Strand 4
A
94 106anti-parallel
Strand 5
A
113 125anti-parallel
Strand 6
A
128 141anti-parallel
Strand 7
A
192 199anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 182first strand
Strand 2
A
187 188anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 46first strand
Strand 2
B
51 59anti-parallel
Strand 3
B
64 77anti-parallel
Strand 4
B
94 106anti-parallel
Strand 5
B
113 124anti-parallel
Strand 6
B
131 141anti-parallel
Strand 7
B
192 199anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
181 182first strand
Strand 2
B
187 188anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il