Analysis of interatomic Contacts of Structural Units in PDB entry:
1VJV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VJV entry

There is 1 chain in PDB entry 1VJV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 103LEU 499
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 1VJV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
117 130Right-handed alpha
Helix 2
2
A
130 139Right-handed alpha
Helix 3
3
A
141 145Right-handed 310
Helix 4
4
A
153 173Right-handed alpha
Helix 5
5
A
181 192Right-handed alpha
Helix 6
6
A
193 197Right-handed 310
Helix 7
7
A
209 226Right-handed alpha
Helix 8
8
A
226 231Right-handed alpha
Helix 9
9
A
271 280Right-handed alpha
Helix 10
10
A
342 345Right-handed 310
Helix 11
11
A
346 370Right-handed alpha
Helix 12
12
A
389 414Right-handed alpha
Helix 13
13
A
473 479Right-handed alpha
Helix 14
14
A
480 482Right-handed 310
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There are 6 sheets in PDB entry 1VJV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 111first strand
Strand 2
A
178 179parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 253first strand
Strand 2
A
235 243anti-parallel
Strand 3
A
257 258anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 253first strand
Strand 2
A
235 243anti-parallel
Strand 3
A
297 305anti-parallel
Strand 4
A
281 282anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 263first strand
Strand 2
A
309 314parallel
Strand 3
A
488 496anti-parallel
Strand 4
A
429 439anti-parallel
Strand 5
A
338 340anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 263first strand
Strand 2
A
309 314parallel
Strand 3
A
488 496anti-parallel
Strand 4
A
429 439anti-parallel
Strand 5
A
447 453anti-parallel
Strand 6
A
461 465anti-parallel
Strand 7
A
468 472anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 320first strand
Strand 2
A
325 328anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il