Analysis of interatomic Contacts of Structural Units in PDB entry:
1VJZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VJZ entry

There is 1 chain in PDB entry 1VJZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 5TYR 329
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1VJZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
26 36Right-handed alpha
Helix 2
2
A
48 50Right-handed 310
Helix 3
3
A
60 62Right-handed 310
Helix 4
4
A
63 78Right-handed alpha
Helix 5
5
A
106 125Right-handed alpha
Helix 6
6
A
149 168Right-handed alpha
Helix 7
7
A
177 182Right-handed alpha
Helix 8
8
A
202 207Right-handed alpha
Helix 9
9
A
234 247Right-handed alpha
Helix 10
10
A
248 252Right-handed 310
Helix 11
11
A
267 285Right-handed alpha
Helix 12
12
A
319 329Right-handed alpha
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There are 3 sheets in PDB entry 1VJZ. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 92first strand
Strand 2
A
80 88anti-parallel
Strand 3
A
132 135parallel
Strand 4
A
173 176parallel
Strand 5
A
193 199parallel
Strand 6
A
254 260parallel
Strand 7
A
288 291parallel
Strand 8
A
9 12parallel
Strand 9
A
40 46parallel
Strand 10
A
80 88parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 228first strand
Strand 2
A
231 233anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
311 313first strand
Strand 2
A
316 318anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il