Analysis of interatomic Contacts of Structural Units in PDB entry:
1VKG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VKG entry

There are 2 chains in PDB entry 1VKG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 15VAL 377
B
 VAL 15VAL 377
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 1VKG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 28Right-handed alpha
Helix 2
2
A
36 48Right-handed alpha
Helix 3
3
A
49 54Right-handed 310
Helix 4
4
A
63 68Right-handed alpha
Helix 5
5
A
72 86Right-handed alpha
Helix 6
6
A
107 128Right-handed alpha
Helix 7
7
A
156 167Right-handed alpha
Helix 8
8
A
182 189Right-handed alpha
Helix 9
9
A
236 254Right-handed alpha
Helix 10
10
A
280 293Right-handed alpha
Helix 11
11
A
307 324Right-handed alpha
Helix 12
12
A
336 340Right-handed 310
Helix 13
13
A
358 374Right-handed alpha
Helix 14
14
B
21 29Right-handed alpha
Helix 15
15
B
36 48Right-handed alpha
Helix 16
16
B
50 54Right-handed 310
Helix 17
17
B
63 69Right-handed alpha
Helix 18
18
B
72 86Right-handed alpha
Helix 19
19
B
107 128Right-handed alpha
Helix 20
20
B
156 166Right-handed alpha
Helix 21
21
B
183 190Right-handed alpha
Helix 22
22
B
219 223Right-handed 310
Helix 23
23
B
236 256Right-handed alpha
Helix 24
24
B
280 294Right-handed alpha
Helix 25
25
B
307 324Right-handed alpha
Helix 26
26
B
337 341Right-handed 310
Helix 27
27
B
358 373Right-handed alpha
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There are 3 sheets in PDB entry 1VKG. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 57first strand
Strand 2
A
17 19parallel
Strand 3
A
133 136parallel
Strand 4
A
297 301parallel
Strand 5
A
259 263parallel
Strand 6
A
172 176parallel
Strand 7
A
195 202parallel
Strand 8
A
226 231parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 219first strand
Strand 2
A
222 223anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 57first strand
Strand 2
B
17 19parallel
Strand 3
B
133 136parallel
Strand 4
B
297 301parallel
Strand 5
B
259 263parallel
Strand 6
B
172 176parallel
Strand 7
B
195 202parallel
Strand 8
B
226 231parallel
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