Analysis of interatomic Contacts of Structural Units in PDB entry:
1VL0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VL0 entry

There are 3 chains in PDB entry 1VL0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0MSE 280
B
 MSE 1MSE 280
C
 HIS 0MSE 280
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 1VL0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 21Right-handed alpha
Helix 2
2
A
39 51Right-handed alpha
Helix 3
3
A
63 70Right-handed alpha
Helix 4
4
A
70 79Right-handed alpha
Helix 5
5
A
79 92Right-handed alpha
Helix 6
6
A
103 105Right-handed 310
Helix 7
7
A
123 140Right-handed alpha
Helix 8
8
A
157 169Right-handed alpha
Helix 9
9
A
185 199Right-handed alpha
Helix 10
10
A
214 226Right-handed alpha
Helix 11
11
A
253 259Right-handed alpha
Helix 12
12
A
266 279Right-handed alpha
Helix 13
13
B
10 21Right-handed alpha
Helix 14
14
B
39 51Right-handed alpha
Helix 15
15
B
63 70Right-handed alpha
Helix 16
16
B
70 79Right-handed alpha
Helix 17
17
B
79 92Right-handed alpha
Helix 18
18
B
103 105Right-handed 310
Helix 19
19
B
123 140Right-handed alpha
Helix 20
20
B
157 169Right-handed alpha
Helix 21
21
B
185 199Right-handed alpha
Helix 22
22
B
214 226Right-handed alpha
Helix 23
23
B
235 239Right-handed 310
Helix 24
24
B
253 259Right-handed alpha
Helix 25
25
B
266 279Right-handed alpha
Helix 26
26
C
10 21Right-handed alpha
Helix 27
27
C
39 51Right-handed alpha
Helix 28
28
C
63 70Right-handed alpha
Helix 29
29
C
70 79Right-handed alpha
Helix 30
30
C
79 92Right-handed alpha
Helix 31
31
C
103 105Right-handed 310
Helix 32
32
C
123 140Right-handed alpha
Helix 33
33
C
157 169Right-handed alpha
Helix 34
34
C
185 199Right-handed alpha
Helix 35
35
C
214 226Right-handed alpha
Helix 36
36
C
235 239Right-handed 310
Helix 37
37
C
253 259Right-handed alpha
Helix 38
38
C
266 279Right-handed alpha
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There are 12 sheets in PDB entry 1VL0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 30first strand
Strand 2
A
1 6parallel
Strand 3
A
54 57parallel
Strand 4
A
95 101parallel
Strand 5
A
143 148parallel
Strand 6
A
202 205parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 152first strand
Strand 2
A
183 184parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 175first strand
Strand 2
A
230 234parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 180first strand
Strand 2
A
212 213anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 30first strand
Strand 2
B
2 6parallel
Strand 3
B
54 57parallel
Strand 4
B
95 101parallel
Strand 5
B
143 148parallel
Strand 6
B
202 205parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
151 152first strand
Strand 2
B
183 184parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
171 175first strand
Strand 2
B
230 234parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 180first strand
Strand 2
B
212 213anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
25 30first strand
Strand 2
C
1 6parallel
Strand 3
C
54 57parallel
Strand 4
C
95 101parallel
Strand 5
C
143 148parallel
Strand 6
C
202 205parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
151 152first strand
Strand 2
C
183 184parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
171 175first strand
Strand 2
C
230 234parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
179 180first strand
Strand 2
C
212 213anti-parallel
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