Analysis of interatomic Contacts of Structural Units in PDB entry:
1VL2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1VL2 entry

There are 4 chains in PDB entry 1VL2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 2	ARG 409
B	LYS 2	ARG 409
C	LYS 2	LYS 404
D	LYS 2	LYS 404

There are 69 helices in PDB entry 1VL2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	12	25	Right-handed alpha
Helix 2	2	A	41	53	Right-handed alpha
Helix 3	3	A	62	70	Right-handed alpha
Helix 4	4	A	70	76	Right-handed alpha
Helix 5	5	A	80	84	Right-handed 310
Helix 6	6	A	87	108	Right-handed alpha
Helix 7	7	A	121	134	Right-handed alpha
Helix 8	8	A	141	144	Right-handed 310
Helix 9	9	A	145	152	Right-handed alpha
Helix 10	10	A	156	166	Right-handed alpha
Helix 11	11	A	191	195	Right-handed 310
Helix 12	12	A	201	205	Right-handed 310
Helix 13	13	A	244	259	Right-handed alpha
Helix 14	14	A	282	300	Right-handed alpha
Helix 15	15	A	301	322	Right-handed alpha
Helix 16	16	A	326	341	Right-handed alpha
Helix 17	17	A	382	405	Right-handed alpha
Helix 18	18	B	12	25	Right-handed alpha
Helix 19	19	B	41	53	Right-handed alpha
Helix 20	20	B	62	70	Right-handed alpha
Helix 21	21	B	70	76	Right-handed alpha
Helix 22	22	B	80	84	Right-handed 310
Helix 23	23	B	87	108	Right-handed alpha
Helix 24	24	B	121	134	Right-handed alpha
Helix 25	25	B	141	144	Right-handed 310
Helix 26	26	B	145	152	Right-handed alpha
Helix 27	27	B	154	166	Right-handed alpha
Helix 28	28	B	191	195	Right-handed 310
Helix 29	29	B	201	205	Right-handed 310
Helix 30	30	B	244	259	Right-handed alpha
Helix 31	31	B	282	300	Right-handed alpha
Helix 32	32	B	301	322	Right-handed alpha
Helix 33	33	B	326	341	Right-handed alpha
Helix 34	34	B	382	405	Right-handed alpha
Helix 35	35	C	12	25	Right-handed alpha
Helix 36	36	C	41	53	Right-handed alpha
Helix 37	37	C	62	70	Right-handed alpha
Helix 38	38	C	70	76	Right-handed alpha
Helix 39	39	C	80	84	Right-handed 310
Helix 40	40	C	87	108	Right-handed alpha
Helix 41	41	C	121	134	Right-handed alpha
Helix 42	42	C	141	144	Right-handed 310
Helix 43	43	C	145	152	Right-handed alpha
Helix 44	44	C	156	166	Right-handed alpha
Helix 45	45	C	191	195	Right-handed 310
Helix 46	46	C	201	205	Right-handed 310
Helix 47	47	C	244	259	Right-handed alpha
Helix 48	48	C	282	300	Right-handed alpha
Helix 49	49	C	301	322	Right-handed alpha
Helix 50	50	C	326	341	Right-handed alpha
Helix 51	51	C	382	404	Right-handed alpha
Helix 52	52	D	12	25	Right-handed alpha
Helix 53	53	D	41	53	Right-handed alpha
Helix 54	54	D	62	70	Right-handed alpha
Helix 55	55	D	70	76	Right-handed alpha
Helix 56	56	D	80	84	Right-handed 310
Helix 57	57	D	87	108	Right-handed alpha
Helix 58	58	D	121	134	Right-handed alpha
Helix 59	59	D	141	144	Right-handed 310
Helix 60	60	D	145	152	Right-handed alpha
Helix 61	61	D	154	166	Right-handed alpha
Helix 62	62	D	191	195	Right-handed 310
Helix 63	63	D	201	205	Right-handed 310
Helix 64	64	D	210	214	Right-handed 310
Helix 65	65	D	244	259	Right-handed alpha
Helix 66	66	D	282	300	Right-handed alpha
Helix 67	67	D	301	322	Right-handed alpha
Helix 68	68	D	326	340	Right-handed alpha
Helix 69	69	D	382	404	Right-handed alpha

There are 12 sheets in PDB entry 1VL2. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	61	first strand
Strand 2	A	28	35	parallel
Strand 3	A	4	8	parallel
Strand 4	A	111	113	parallel
Strand 5	A	138	140	parallel

Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	181	first strand
Strand 2	A	186	189	anti-parallel
Strand 3	A	275	281	anti-parallel
Strand 4	A	263	269	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	241	242	first strand
Strand 2	A	229	235	anti-parallel
Strand 3	A	219	226	anti-parallel
Strand 4	A	345	352	anti-parallel
Strand 5	A	355	362	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	61	first strand
Strand 2	B	28	35	parallel
Strand 3	B	4	8	parallel
Strand 4	B	111	113	parallel
Strand 5	B	138	140	parallel

Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	181	first strand
Strand 2	B	186	189	anti-parallel
Strand 3	B	275	281	anti-parallel
Strand 4	B	263	269	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	241	242	first strand
Strand 2	B	229	235	anti-parallel
Strand 3	B	219	226	anti-parallel
Strand 4	B	345	352	anti-parallel
Strand 5	B	355	362	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	61	first strand
Strand 2	C	28	35	parallel
Strand 3	C	4	8	parallel
Strand 4	C	111	113	parallel
Strand 5	C	138	140	parallel

Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	178	181	first strand
Strand 2	C	186	189	anti-parallel
Strand 3	C	275	281	anti-parallel
Strand 4	C	263	269	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	241	242	first strand
Strand 2	C	229	235	anti-parallel
Strand 3	C	219	226	anti-parallel
Strand 4	C	345	352	anti-parallel
Strand 5	C	355	362	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	61	first strand
Strand 2	D	28	35	parallel
Strand 3	D	4	8	parallel
Strand 4	D	111	113	parallel
Strand 5	D	138	140	parallel

Back to list of sheets
Back to top of page

There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	178	181	first strand
Strand 2	D	186	189	anti-parallel
Strand 3	D	275	281	anti-parallel
Strand 4	D	263	269	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	241	242	first strand
Strand 2	D	229	235	anti-parallel
Strand 3	D	219	226	anti-parallel
Strand 4	D	345	352	anti-parallel
Strand 5	D	355	362	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1VL2

Analysis of interatomic Contacts of Structural Units in PDB entry:
1VL2