Analysis of interatomic Contacts of Structural Units in PDB entry:
1VL6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1VL6 entry

There are 4 chains in PDB entry 1VL6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 0	ALA 376
B	HIS 0	ALA 376
C	HIS 0	ALA 376
D	HIS 0	ALA 376

There are 78 helices in PDB entry 1VL6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	2	11	Right-handed alpha
Helix 2	2	A	24	32	Right-handed alpha
Helix 3	3	A	35	46	Right-handed alpha
Helix 4	4	A	49	54	Right-handed alpha
Helix 5	5	A	55	57	Right-handed 310
Helix 6	6	A	76	96	Right-handed alpha
Helix 7	7	A	108	119	Right-handed alpha
Helix 8	8	A	120	123	Right-handed 310
Helix 9	9	A	134	147	Right-handed alpha
Helix 10	10	A	154	175	Right-handed alpha
Helix 11	11	A	189	203	Right-handed alpha
Helix 12	12	A	220	224	Right-handed 310
Helix 13	13	A	226	235	Right-handed alpha
Helix 14	14	A	244	250	Right-handed alpha
Helix 15	15	A	265	270	Right-handed alpha
Helix 16	16	A	289	296	Right-handed alpha
Helix 17	17	A	313	316	Right-handed 310
Helix 18	18	A	317	329	Right-handed alpha
Helix 19	19	A	333	347	Right-handed alpha
Helix 20	20	A	361	375	Right-handed alpha
Helix 21	21	B	2	11	Right-handed alpha
Helix 22	22	B	24	32	Right-handed alpha
Helix 23	23	B	35	46	Right-handed alpha
Helix 24	24	B	49	54	Right-handed alpha
Helix 25	25	B	55	57	Right-handed 310
Helix 26	26	B	76	96	Right-handed alpha
Helix 27	27	B	108	119	Right-handed alpha
Helix 28	28	B	120	123	Right-handed 310
Helix 29	29	B	134	147	Right-handed alpha
Helix 30	30	B	154	175	Right-handed alpha
Helix 31	31	B	189	203	Right-handed alpha
Helix 32	32	B	220	224	Right-handed 310
Helix 33	33	B	226	236	Right-handed alpha
Helix 34	34	B	244	250	Right-handed alpha
Helix 35	35	B	313	316	Right-handed 310
Helix 36	36	B	317	329	Right-handed alpha
Helix 37	37	B	333	346	Right-handed alpha
Helix 38	38	B	361	375	Right-handed alpha
Helix 39	39	C	2	11	Right-handed alpha
Helix 40	40	C	24	32	Right-handed alpha
Helix 41	41	C	35	46	Right-handed alpha
Helix 42	42	C	49	54	Right-handed alpha
Helix 43	43	C	55	57	Right-handed 310
Helix 44	44	C	76	96	Right-handed alpha
Helix 45	45	C	108	119	Right-handed alpha
Helix 46	46	C	120	123	Right-handed 310
Helix 47	47	C	134	147	Right-handed alpha
Helix 48	48	C	154	175	Right-handed alpha
Helix 49	49	C	177	180	Right-handed 310
Helix 50	50	C	189	203	Right-handed alpha
Helix 51	51	C	220	224	Right-handed 310
Helix 52	52	C	226	235	Right-handed alpha
Helix 53	53	C	244	250	Right-handed alpha
Helix 54	54	C	265	270	Right-handed alpha
Helix 55	55	C	289	296	Right-handed alpha
Helix 56	56	C	313	316	Right-handed 310
Helix 57	57	C	317	329	Right-handed alpha
Helix 58	58	C	333	347	Right-handed alpha
Helix 59	59	C	361	375	Right-handed alpha
Helix 60	60	D	2	11	Right-handed alpha
Helix 61	61	D	24	32	Right-handed alpha
Helix 62	62	D	35	46	Right-handed alpha
Helix 63	63	D	49	54	Right-handed alpha
Helix 64	64	D	55	57	Right-handed 310
Helix 65	65	D	76	96	Right-handed alpha
Helix 66	66	D	108	119	Right-handed alpha
Helix 67	67	D	120	123	Right-handed 310
Helix 68	68	D	134	147	Right-handed alpha
Helix 69	69	D	154	175	Right-handed alpha
Helix 70	70	D	189	203	Right-handed alpha
Helix 71	71	D	226	235	Right-handed alpha
Helix 72	72	D	244	250	Right-handed alpha
Helix 73	73	D	265	270	Right-handed alpha
Helix 74	74	D	289	296	Right-handed alpha
Helix 75	75	D	313	316	Right-handed 310
Helix 76	76	D	317	329	Right-handed alpha
Helix 77	77	D	333	347	Right-handed alpha
Helix 78	78	D	361	375	Right-handed alpha

There are 10 sheets in PDB entry 1VL6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	17	first strand
Strand 2	B	15	17	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	103	first strand
Strand 2	A	59	64	parallel
Strand 3	A	125	128	parallel
Strand 4	A	151	153	parallel

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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	214	215	first strand
Strand 2	A	206	211	anti-parallel
Strand 3	A	182	186	parallel
Strand 4	A	254	257	parallel
Strand 5	A	277	280	parallel
Strand 6	A	300	303	parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	103	first strand
Strand 2	B	59	64	parallel
Strand 3	B	125	128	parallel
Strand 4	B	151	153	parallel

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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	214	215	first strand
Strand 2	B	208	211	anti-parallel
Strand 3	B	184	186	parallel
Strand 4	B	255	257	parallel
Strand 5	B	278	280	parallel
Strand 6	B	301	302	parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	17	first strand
Strand 2	D	15	17	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	103	first strand
Strand 2	C	59	64	parallel
Strand 3	C	125	128	parallel
Strand 4	C	151	153	parallel

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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	214	215	first strand
Strand 2	C	206	211	anti-parallel
Strand 3	C	182	186	parallel
Strand 4	C	254	257	parallel
Strand 5	C	277	280	parallel
Strand 6	C	300	303	parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	103	first strand
Strand 2	D	59	64	parallel
Strand 3	D	125	128	parallel
Strand 4	D	151	153	parallel

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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	214	215	first strand
Strand 2	D	206	211	anti-parallel
Strand 3	D	182	186	parallel
Strand 4	D	254	257	parallel
Strand 5	D	277	280	parallel
Strand 6	D	300	303	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1VL6

Analysis of interatomic Contacts of Structural Units in PDB entry:
1VL6