Analysis of interatomic Contacts of Structural Units in PDB entry:
1VL8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VL8 entry

There are 2 chains in PDB entry 1VL8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 5ASN 255
B
 VAL 4ASN 255
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 1VL8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 32Right-handed alpha
Helix 2
2
A
42 58Right-handed alpha
Helix 3
3
A
70 86Right-handed alpha
Helix 4
4
A
102 106Right-handed 310
Helix 5
5
A
107 119Right-handed alpha
Helix 6
6
A
119 134Right-handed alpha
Helix 7
7
A
146 150Right-handed 310
Helix 8
8
A
157 179Right-handed alpha
Helix 9
9
A
180 182Right-handed 310
Helix 10
10
A
198 203Right-handed alpha
Helix 11
11
A
204 214Right-handed alpha
Helix 12
12
A
222 225Right-handed 310
Helix 13
13
A
226 235Right-handed alpha
Helix 14
14
A
236 239Right-handed 310
Helix 15
15
A
251 255Right-handed 310
Helix 16
16
B
19 32Right-handed alpha
Helix 17
17
B
42 58Right-handed alpha
Helix 18
18
B
70 86Right-handed alpha
Helix 19
19
B
102 106Right-handed 310
Helix 20
20
B
107 119Right-handed alpha
Helix 21
21
B
119 134Right-handed alpha
Helix 22
22
B
146 150Right-handed 310
Helix 23
23
B
157 179Right-handed alpha
Helix 24
24
B
180 182Right-handed 310
Helix 25
25
B
195 197Right-handed 310
Helix 26
26
B
198 203Right-handed alpha
Helix 27
27
B
204 214Right-handed alpha
Helix 28
28
B
222 225Right-handed 310
Helix 29
29
B
226 235Right-handed alpha
Helix 30
30
B
236 239Right-handed 310
Helix 31
31
B
251 255Right-handed 310
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There are 2 sheets in PDB entry 1VL8. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 65first strand
Strand 2
A
35 40parallel
Strand 3
A
11 15parallel
Strand 4
A
90 93parallel
Strand 5
A
140 144parallel
Strand 6
A
184 190parallel
Strand 7
A
245 248parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 65first strand
Strand 2
B
35 40parallel
Strand 3
B
11 15parallel
Strand 4
B
90 93parallel
Strand 5
B
140 144parallel
Strand 6
B
184 190parallel
Strand 7
B
245 248parallel
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