Analysis of interatomic Contacts of Structural Units in PDB entry:
1VLH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VLH entry

There are 6 chains in PDB entry 1VLH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 157
B
 MET 1GLU 158
C
 MET 1GLU 158
D
 MET 1GLU 158
E
 MET 1LYS 157
F
 MET 1LYS 157
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 1VLH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 25Right-handed alpha
Helix 2
2
A
45 57Right-handed alpha
Helix 3
3
A
71 80Right-handed alpha
Helix 4
4
A
93 108Right-handed alpha
Helix 5
5
A
119 123Right-handed 310
Helix 6
6
A
126 136Right-handed alpha
Helix 7
7
A
145 156Right-handed alpha
Helix 8
8
B
13 24Right-handed alpha
Helix 9
9
B
45 57Right-handed alpha
Helix 10
10
B
71 80Right-handed alpha
Helix 11
11
B
93 108Right-handed alpha
Helix 12
12
B
119 123Right-handed 310
Helix 13
13
B
126 136Right-handed alpha
Helix 14
14
B
145 156Right-handed alpha
Helix 15
15
C
13 25Right-handed alpha
Helix 16
16
C
45 57Right-handed alpha
Helix 17
17
C
71 79Right-handed alpha
Helix 18
18
C
93 108Right-handed alpha
Helix 19
19
C
119 123Right-handed 310
Helix 20
20
C
126 136Right-handed alpha
Helix 21
21
C
145 156Right-handed alpha
Helix 22
22
D
13 25Right-handed alpha
Helix 23
23
D
45 57Right-handed alpha
Helix 24
24
D
71 79Right-handed alpha
Helix 25
25
D
93 108Right-handed alpha
Helix 26
26
D
119 123Right-handed 310
Helix 27
27
D
126 136Right-handed alpha
Helix 28
28
D
145 156Right-handed alpha
Helix 29
29
E
13 24Right-handed alpha
Helix 30
30
E
45 57Right-handed alpha
Helix 31
31
E
71 79Right-handed alpha
Helix 32
32
E
93 108Right-handed alpha
Helix 33
33
E
119 123Right-handed 310
Helix 34
34
E
126 136Right-handed alpha
Helix 35
35
E
145 156Right-handed alpha
Helix 36
36
F
13 24Right-handed alpha
Helix 37
37
F
45 57Right-handed alpha
Helix 38
38
F
71 80Right-handed alpha
Helix 39
39
F
93 108Right-handed alpha
Helix 40
40
F
119 123Right-handed 310
Helix 41
41
F
126 136Right-handed alpha
Helix 42
42
F
145 156Right-handed alpha
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There are 9 sheets in PDB entry 1VLH. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 7first strand
Strand 2
A
29 35parallel
Strand 3
A
63 68parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 88first strand
Strand 2
A
112 117parallel
Strand 3
B
112 117anti-parallel
Strand 4
B
83 88parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 7first strand
Strand 2
B
29 35parallel
Strand 3
B
63 68parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 7first strand
Strand 2
C
29 35parallel
Strand 3
C
63 68parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
83 88first strand
Strand 2
C
112 117parallel
Strand 3
F
112 117anti-parallel
Strand 4
F
83 88parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2 7first strand
Strand 2
D
29 35parallel
Strand 3
D
63 68parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
83 88first strand
Strand 2
D
112 117parallel
Strand 3
E
112 117anti-parallel
Strand 4
E
83 88parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
2 7first strand
Strand 2
E
29 35parallel
Strand 3
E
63 68parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
2 7first strand
Strand 2
F
29 35parallel
Strand 3
F
63 68parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il