Analysis of interatomic Contacts of Structural Units in PDB entry:
1VLI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VLI entry

There is 1 chain in PDB entry 1VLI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2ASP 368
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 1VLI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
30 45Right-handed alpha
Helix 2
2
A
55 60Right-handed 310
Helix 3
3
A
76 81Right-handed alpha
Helix 4
4
A
82 84Right-handed 310
Helix 5
5
A
87 89Right-handed 310
Helix 6
6
A
90 101Right-handed alpha
Helix 7
7
A
111 120Right-handed alpha
Helix 8
8
A
129 133Right-handed 310
Helix 9
9
A
135 144Right-handed alpha
Helix 10
10
A
157 170Right-handed alpha
Helix 11
11
A
188 192Right-handed 310
Helix 12
12
A
193 194Right-handed 310
Helix 13
13
A
195 204Right-handed alpha
Helix 14
14
A
219 228Right-handed alpha
Helix 15
15
A
253 274Right-handed alpha
Helix 16
16
A
280 285Right-handed alpha
Helix 17
17
A
297 302Right-handed alpha
Helix 18
18
A
336 338Right-handed 310
Helix 19
19
A
339 345Right-handed alpha
Helix 20
20
A
360 364Right-handed 310
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There are 3 sheets in PDB entry 1VLI. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 6first strand
Strand 2
A
9 12anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 106first strand
Strand 2
A
48 51parallel
Strand 3
A
18 24parallel
Strand 4
A
232 236parallel
Strand 5
A
208 213parallel
Strand 6
A
176 181parallel
Strand 7
A
149 152parallel
Strand 8
A
126 128parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 308first strand
Strand 2
A
323 326anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il