Analysis of interatomic Contacts of Structural Units in PDB entry:
1VLJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VLJ entry

There are 2 chains in PDB entry 1VLJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -2LYS 395
B
 HIS -4LYS 395
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 1VLJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 20Right-handed 310
Helix 2
2
A
21 29Right-handed alpha
Helix 3
3
A
41 46Right-handed alpha
Helix 4
4
A
47 59Right-handed alpha
Helix 5
5
A
74 88Right-handed alpha
Helix 6
6
A
98 112Right-handed alpha
Helix 7
7
A
117 124Right-handed 310
Helix 8
8
A
144 148Right-handed 310
Helix 9
9
A
167 170Right-handed 310
Helix 10
10
A
178 184Right-handed 310
Helix 11
11
A
185 205Right-handed alpha
Helix 12
12
A
210 234Right-handed alpha
Helix 13
13
A
237 252Right-handed alpha
Helix 14
14
A
265 279Right-handed alpha
Helix 15
15
A
281 298Right-handed alpha
Helix 16
16
A
301 314Right-handed alpha
Helix 17
17
A
318 337Right-handed alpha
Helix 18
18
A
343 347Right-handed 310
Helix 19
19
A
349 351Right-handed 310
Helix 20
20
A
352 367Right-handed alpha
Helix 21
21
A
368 372Right-handed 310
Helix 22
22
A
382 393Right-handed alpha
Helix 23
23
B
18 20Right-handed 310
Helix 24
24
B
21 29Right-handed alpha
Helix 25
25
B
41 46Right-handed alpha
Helix 26
26
B
47 59Right-handed alpha
Helix 27
27
B
74 88Right-handed alpha
Helix 28
28
B
98 112Right-handed alpha
Helix 29
29
B
117 123Right-handed 310
Helix 30
30
B
144 148Right-handed 310
Helix 31
31
B
167 170Right-handed 310
Helix 32
32
B
178 184Right-handed 310
Helix 33
33
B
185 205Right-handed alpha
Helix 34
34
B
210 234Right-handed alpha
Helix 35
35
B
237 252Right-handed alpha
Helix 36
36
B
265 279Right-handed alpha
Helix 37
37
B
281 298Right-handed alpha
Helix 38
38
B
301 314Right-handed alpha
Helix 39
39
B
318 337Right-handed alpha
Helix 40
40
B
343 347Right-handed 310
Helix 41
41
B
349 351Right-handed 310
Helix 42
42
B
352 367Right-handed alpha
Helix 43
43
B
368 372Right-handed 310
Helix 44
44
B
382 393Right-handed alpha
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There are 4 sheets in PDB entry 1VLJ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
B
11 14anti-parallel
Strand 3
B
173 176parallel
Strand 4
B
134 138parallel
Strand 5
B
92 97parallel
Strand 6
B
33 37parallel
Strand 7
B
62 66parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 66first strand
Strand 2
A
33 38parallel
Strand 3
A
92 97parallel
Strand 4
A
134 138parallel
Strand 5
A
173 176parallel
Strand 6
A
11 14parallel
Strand 7
B
4 6anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 155first strand
Strand 2
A
160 165anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 155first strand
Strand 2
B
160 165anti-parallel
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