Analysis of interatomic Contacts of Structural Units in PDB entry:
1VLM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VLM entry

There are 2 chains in PDB entry 1VLM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0LYS 207
B
 MSE 1LYS 207
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 1VLM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 8Right-handed alpha
Helix 2
2
A
8 19Right-handed alpha
Helix 3
3
A
19 34Right-handed alpha
Helix 4
4
A
49 54Right-handed alpha
Helix 5
5
A
62 72Right-handed alpha
Helix 6
6
A
99 103Right-handed 310
Helix 7
7
A
105 116Right-handed alpha
Helix 8
8
A
132 141Right-handed alpha
Helix 9
9
A
155 166Right-handed alpha
Helix 10
10
A
180 184Right-handed 310
Helix 11
11
B
2 8Right-handed alpha
Helix 12
12
B
8 19Right-handed alpha
Helix 13
13
B
19 34Right-handed alpha
Helix 14
14
B
49 54Right-handed alpha
Helix 15
15
B
62 72Right-handed alpha
Helix 16
16
B
99 103Right-handed 310
Helix 17
17
B
105 116Right-handed alpha
Helix 18
18
B
132 141Right-handed alpha
Helix 19
19
B
142 145Right-handed 310
Helix 20
20
B
155 167Right-handed alpha
Helix 21
21
B
180 184Right-handed 310
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There are 2 sheets in PDB entry 1VLM. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 78first strand
Strand 2
A
57 60parallel
Strand 3
A
39 42parallel
Strand 4
A
91 97parallel
Strand 5
A
117 128parallel
Strand 6
A
199 205anti-parallel
Strand 7
A
169 176anti-parallel
Strand 8
A
191 192anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 77first strand
Strand 2
B
57 59parallel
Strand 3
B
39 42parallel
Strand 4
B
91 97parallel
Strand 5
B
117 128parallel
Strand 6
B
199 205anti-parallel
Strand 7
B
169 176anti-parallel
Strand 8
B
191 192anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il