Analysis of interatomic Contacts of Structural Units in PDB entry:
1VLO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VLO entry

There is 1 chain in PDB entry 1VLO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 4CYS 367
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 1VLO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 14Right-handed alpha
Helix 2
2
A
32 43Right-handed alpha
Helix 3
3
A
61 70Right-handed alpha
Helix 4
4
A
73 77Right-handed 310
Helix 5
5
A
114 116Right-handed 310
Helix 6
6
A
117 130Right-handed alpha
Helix 7
7
A
131 133Right-handed 310
Helix 8
8
A
151 158Right-handed alpha
Helix 9
9
A
161 169Right-handed alpha
Helix 10
10
A
201 214Right-handed alpha
Helix 11
11
A
220 231Right-handed alpha
Helix 12
12
A
245 249Right-handed 310
Helix 13
13
A
251 255Right-handed 310
Helix 14
14
A
266 277Right-handed alpha
Helix 15
15
A
364 367Right-handed 310
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There are 5 sheets in PDB entry 1VLO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 21first strand
Strand 2
A
24 29anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 179first strand
Strand 2
A
182 185anti-parallel
Strand 3
A
194 200anti-parallel
Strand 4
A
142 148anti-parallel
Strand 5
A
45 48anti-parallel
Strand 6
A
217 218parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 89first strand
Strand 2
A
95 105anti-parallel
Strand 3
A
108 113anti-parallel
Strand 4
A
53 58anti-parallel
Strand 5
A
135 138anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
280 286first strand
Strand 2
A
323 330anti-parallel
Strand 3
A
307 318anti-parallel
Strand 4
A
297 301anti-parallel
Strand 5
A
337 342anti-parallel
Strand 6
A
345 352anti-parallel
Strand 7
A
280 286anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
357 358first strand
Strand 2
A
361 362anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il