Analysis of interatomic Contacts of Structural Units in PDB entry:
1VLP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VLP entry

There are 4 chains in PDB entry 1VLP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -2THR 415
B
 MSE 1TRP 419
C
 HIS -1GLU 416
D
 HIS 0THR 415
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 86 helices in PDB entry 1VLP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 27Right-handed alpha
Helix 2
2
A
46 60Right-handed alpha
Helix 3
3
A
61 63Right-handed 310
Helix 4
4
A
66 77Right-handed alpha
Helix 5
5
A
81 90Right-handed alpha
Helix 6
6
A
96 100Right-handed alpha
Helix 7
7
A
125 129Right-handed alpha
Helix 8
8
A
131 147Right-handed alpha
Helix 9
9
A
155 170Right-handed alpha
Helix 10
10
A
184 202Right-handed alpha
Helix 11
11
A
202 207Right-handed alpha
Helix 12
12
A
215 223Right-handed alpha
Helix 13
13
A
231 243Right-handed alpha
Helix 14
14
A
247 261Right-handed alpha
Helix 15
15
A
262 265Right-handed 310
Helix 16
16
A
274 280Right-handed alpha
Helix 17
17
A
285 290Right-handed alpha
Helix 18
18
A
299 313Right-handed alpha
Helix 19
19
A
331 345Right-handed alpha
Helix 20
20
A
354 359Right-handed alpha
Helix 21
21
A
401 412Right-handed alpha
Helix 22
22
B
13 27Right-handed alpha
Helix 23
23
B
46 60Right-handed alpha
Helix 24
24
B
61 63Right-handed 310
Helix 25
25
B
66 77Right-handed alpha
Helix 26
26
B
81 90Right-handed alpha
Helix 27
27
B
96 100Right-handed alpha
Helix 28
28
B
125 129Right-handed alpha
Helix 29
29
B
131 147Right-handed alpha
Helix 30
30
B
155 170Right-handed alpha
Helix 31
31
B
184 202Right-handed alpha
Helix 32
32
B
202 207Right-handed alpha
Helix 33
33
B
215 223Right-handed alpha
Helix 34
34
B
231 243Right-handed alpha
Helix 35
35
B
247 261Right-handed alpha
Helix 36
36
B
262 265Right-handed 310
Helix 37
37
B
274 280Right-handed alpha
Helix 38
38
B
285 290Right-handed alpha
Helix 39
39
B
299 313Right-handed alpha
Helix 40
40
B
331 345Right-handed alpha
Helix 41
41
B
354 359Right-handed alpha
Helix 42
42
B
401 412Right-handed alpha
Helix 43
43
C
13 27Right-handed alpha
Helix 44
44
C
46 60Right-handed alpha
Helix 45
45
C
61 63Right-handed 310
Helix 46
46
C
66 77Right-handed alpha
Helix 47
47
C
81 90Right-handed alpha
Helix 48
48
C
96 100Right-handed alpha
Helix 49
49
C
125 129Right-handed alpha
Helix 50
50
C
131 147Right-handed alpha
Helix 51
51
C
155 170Right-handed alpha
Helix 52
52
C
184 202Right-handed alpha
Helix 53
53
C
202 207Right-handed alpha
Helix 54
54
C
215 223Right-handed alpha
Helix 55
55
C
231 243Right-handed alpha
Helix 56
56
C
247 261Right-handed alpha
Helix 57
57
C
262 265Right-handed 310
Helix 58
58
C
274 281Right-handed alpha
Helix 59
59
C
285 290Right-handed alpha
Helix 60
60
C
299 313Right-handed alpha
Helix 61
61
C
331 345Right-handed alpha
Helix 62
62
C
354 359Right-handed alpha
Helix 63
63
C
394 398Right-handed 310
Helix 64
64
C
401 413Right-handed alpha
Helix 65
65
D
13 27Right-handed alpha
Helix 66
66
D
46 60Right-handed alpha
Helix 67
67
D
61 63Right-handed 310
Helix 68
68
D
66 77Right-handed alpha
Helix 69
69
D
81 90Right-handed alpha
Helix 70
70
D
96 100Right-handed alpha
Helix 71
71
D
125 129Right-handed alpha
Helix 72
72
D
131 147Right-handed alpha
Helix 73
73
D
155 170Right-handed alpha
Helix 74
74
D
184 202Right-handed alpha
Helix 75
75
D
202 207Right-handed alpha
Helix 76
76
D
215 223Right-handed alpha
Helix 77
77
D
231 243Right-handed alpha
Helix 78
78
D
247 261Right-handed alpha
Helix 79
79
D
262 265Right-handed 310
Helix 80
80
D
274 280Right-handed alpha
Helix 81
81
D
285 290Right-handed alpha
Helix 82
82
D
299 313Right-handed alpha
Helix 83
83
D
331 345Right-handed alpha
Helix 84
84
D
354 359Right-handed alpha
Helix 85
85
D
394 398Right-handed 310
Helix 86
86
D
401 413Right-handed alpha
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There are 11 sheets in PDB entry 1VLP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 108first strand
Strand 2
A
111 124anti-parallel
Strand 3
A
31 38anti-parallel
Strand 4
A
376 383anti-parallel
Strand 5
A
386 387anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 213first strand
Strand 2
A
174 176parallel
Strand 3
A
348 353parallel
Strand 4
A
323 326parallel
Strand 5
A
292 295parallel
Strand 6
A
267 269parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
361 362first strand
Strand 2
A
370 371anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 108first strand
Strand 2
B
111 124anti-parallel
Strand 3
B
31 38anti-parallel
Strand 4
B
376 383anti-parallel
Strand 5
B
386 387anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
210 213first strand
Strand 2
B
174 176parallel
Strand 3
B
348 353parallel
Strand 4
B
323 326parallel
Strand 5
B
292 295parallel
Strand 6
B
267 269parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
361 362first strand
Strand 2
B
370 371anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
101 108first strand
Strand 2
C
111 124anti-parallel
Strand 3
C
31 38anti-parallel
Strand 4
C
376 383anti-parallel
Strand 5
C
386 387anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
210 213first strand
Strand 2
C
174 176parallel
Strand 3
C
348 353parallel
Strand 4
C
323 326parallel
Strand 5
C
292 295parallel
Strand 6
C
267 269parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
361 362first strand
Strand 2
C
370 371anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
101 108first strand
Strand 2
D
111 124anti-parallel
Strand 3
D
31 38anti-parallel
Strand 4
D
376 383anti-parallel
Strand 5
D
386 387anti-parallel
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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
210 213first strand
Strand 2
D
174 176parallel
Strand 3
D
348 353parallel
Strand 4
D
323 326parallel
Strand 5
D
292 295parallel
Strand 6
D
267 269parallel
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