Analysis of interatomic Contacts of Structural Units in PDB entry:
1VLR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VLR entry

There are 2 chains in PDB entry 1VLR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 38ARG 337
B
 VAL 39ARG 337
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 1VLR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
89 98Right-handed alpha
Helix 2
2
A
120 125Right-handed alpha
Helix 3
3
A
135 143Right-handed alpha
Helix 4
4
A
153 160Right-handed alpha
Helix 5
5
A
160 169Right-handed alpha
Helix 6
6
A
172 180Right-handed alpha
Helix 7
7
A
228 232Right-handed 310
Helix 8
8
A
233 235Right-handed 310
Helix 9
9
A
236 256Right-handed alpha
Helix 10
10
A
258 260Right-handed 310
Helix 11
11
A
297 307Right-handed alpha
Helix 12
12
A
309 314Right-handed alpha
Helix 13
13
A
324 337Right-handed alpha
Helix 14
14
B
89 98Right-handed alpha
Helix 15
15
B
120 124Right-handed 310
Helix 16
16
B
135 143Right-handed alpha
Helix 17
17
B
153 160Right-handed alpha
Helix 18
18
B
160 167Right-handed alpha
Helix 19
19
B
172 180Right-handed alpha
Helix 20
20
B
184 188Right-handed 310
Helix 21
21
B
211 214Right-handed 310
Helix 22
22
B
228 232Right-handed 310
Helix 23
23
B
233 235Right-handed 310
Helix 24
24
B
236 256Right-handed alpha
Helix 25
25
B
258 260Right-handed 310
Helix 26
26
B
297 307Right-handed alpha
Helix 27
27
B
309 314Right-handed alpha
Helix 28
28
B
324 337Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 1VLR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 55first strand
Strand 2
A
60 67anti-parallel
Strand 3
A
77 85anti-parallel
Strand 4
A
126 131anti-parallel
Strand 5
B
112 118anti-parallel
Strand 6
B
102 108anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 108first strand
Strand 2
A
112 118anti-parallel
Strand 3
B
126 131anti-parallel
Strand 4
B
78 85anti-parallel
Strand 5
B
60 66anti-parallel
Strand 6
B
47 55anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 152first strand
Strand 2
A
316 321anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 192first strand
Strand 2
A
199 203anti-parallel
Strand 3
A
216 221anti-parallel
Strand 4
A
276 281anti-parallel
Strand 5
A
262 267anti-parallel
Strand 6
A
294 296anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
147 152first strand
Strand 2
B
316 321anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
190 192first strand
Strand 2
B
199 203anti-parallel
Strand 3
B
216 221anti-parallel
Strand 4
B
276 281anti-parallel
Strand 5
B
262 267anti-parallel
Strand 6
B
294 296anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il