Analysis of interatomic Contacts of Structural Units in PDB entry:
1VLU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VLU entry

There are 2 chains in PDB entry 1VLU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0TYR 435
B
 HIS 0TYR 435
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 1VLU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 19Right-handed alpha
Helix 2
2
A
22 40Right-handed alpha
Helix 3
3
A
40 58Right-handed alpha
Helix 4
4
A
61 69Right-handed alpha
Helix 5
5
A
74 89Right-handed alpha
Helix 6
6
A
126 140Right-handed alpha
Helix 7
7
A
148 150Right-handed 310
Helix 8
8
A
151 174Right-handed alpha
Helix 9
9
A
189 195Right-handed 310
Helix 10
10
A
207 217Right-handed alpha
Helix 11
11
A
239 250Right-handed alpha
Helix 12
12
A
272 285Right-handed alpha
Helix 13
13
A
291 306Right-handed alpha
Helix 14
14
A
309 314Right-handed alpha
Helix 15
15
A
341 350Right-handed alpha
Helix 16
16
A
364 375Right-handed alpha
Helix 17
17
A
385 389Right-handed 310
Helix 18
18
A
415 417Right-handed 310
Helix 19
19
B
2 19Right-handed alpha
Helix 20
20
B
22 40Right-handed alpha
Helix 21
21
B
40 58Right-handed alpha
Helix 22
22
B
62 67Right-handed alpha
Helix 23
23
B
74 89Right-handed alpha
Helix 24
24
B
125 129Right-handed 310
Helix 25
25
B
130 139Right-handed alpha
Helix 26
26
B
151 169Right-handed alpha
Helix 27
27
B
169 174Right-handed alpha
Helix 28
28
B
188 193Right-handed alpha
Helix 29
29
B
207 217Right-handed alpha
Helix 30
30
B
239 252Right-handed alpha
Helix 31
31
B
273 285Right-handed alpha
Helix 32
32
B
291 305Right-handed alpha
Helix 33
33
B
309 314Right-handed alpha
Helix 34
34
B
341 350Right-handed alpha
Helix 35
35
B
364 375Right-handed alpha
Helix 36
36
B
385 390Right-handed 310
Helix 37
37
B
415 417Right-handed 310
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There are 6 sheets in PDB entry 1VLU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 103first strand
Strand 2
A
106 114anti-parallel
Strand 3
A
419 426anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 182first strand
Strand 2
A
142 146parallel
Strand 3
A
117 122parallel
Strand 4
A
201 205parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 290first strand
Strand 2
A
335 338parallel
Strand 3
A
262 266parallel
Strand 4
A
230 234parallel
Strand 5
A
357 361parallel
Strand 6
A
379 382parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 103first strand
Strand 2
B
106 114anti-parallel
Strand 3
B
419 426anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
180 182first strand
Strand 2
B
142 147parallel
Strand 3
B
117 122parallel
Strand 4
B
201 205parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
316 318first strand
Strand 2
B
288 290parallel
Strand 3
B
333 338parallel
Strand 4
B
261 266parallel
Strand 5
B
229 234parallel
Strand 6
B
358 361parallel
Strand 7
B
380 382parallel
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