Analysis of interatomic Contacts of Structural Units in PDB entry:
1VLW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VLW entry

There are 3 chains in PDB entry 1VLW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -1CYS 203
B
 HIS -2THR 204
C
 HIS 0CYS 203
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 1VLW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-1 11Right-handed alpha
Helix 2
2
A
20 34Right-handed alpha
Helix 3
3
A
47 54Right-handed alpha
Helix 4
4
A
55 60Right-handed alpha
Helix 5
5
A
72 83Right-handed alpha
Helix 6
6
A
93 103Right-handed alpha
Helix 7
7
A
113 123Right-handed alpha
Helix 8
8
A
137 146Right-handed alpha
Helix 9
9
A
163 170Right-handed alpha
Helix 10
10
A
178 183Right-handed alpha
Helix 11
11
A
185 203Right-handed alpha
Helix 12
12
B
-2 11Right-handed alpha
Helix 13
13
B
20 34Right-handed alpha
Helix 14
14
B
47 55Right-handed alpha
Helix 15
15
B
55 60Right-handed alpha
Helix 16
16
B
72 83Right-handed alpha
Helix 17
17
B
93 104Right-handed alpha
Helix 18
18
B
113 123Right-handed alpha
Helix 19
19
B
137 146Right-handed alpha
Helix 20
20
B
163 171Right-handed alpha
Helix 21
21
B
178 183Right-handed alpha
Helix 22
22
B
185 202Right-handed alpha
Helix 23
23
C
0 11Right-handed alpha
Helix 24
24
C
20 34Right-handed alpha
Helix 25
25
C
47 55Right-handed alpha
Helix 26
26
C
55 61Right-handed alpha
Helix 27
27
C
72 82Right-handed alpha
Helix 28
28
C
93 104Right-handed alpha
Helix 29
29
C
113 123Right-handed alpha
Helix 30
30
C
137 146Right-handed alpha
Helix 31
31
C
163 170Right-handed alpha
Helix 32
32
C
178 183Right-handed alpha
Helix 33
33
C
185 203Right-handed alpha
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There are 9 sheets in PDB entry 1VLW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 68first strand
Strand 2
A
38 42parallel
Strand 3
A
12 16parallel
Strand 4
A
175 177parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 88first strand
Strand 2
A
107 108parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 111first strand
Strand 2
A
127 130parallel
Strand 3
A
152 155parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 68first strand
Strand 2
B
38 42parallel
Strand 3
B
12 16parallel
Strand 4
B
175 177parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 88first strand
Strand 2
B
106 108parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
110 111first strand
Strand 2
B
127 130parallel
Strand 3
B
152 155parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
64 68first strand
Strand 2
C
38 42parallel
Strand 3
C
12 16parallel
Strand 4
C
175 177parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
86 88first strand
Strand 2
C
106 108parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
110 111first strand
Strand 2
C
127 130parallel
Strand 3
C
152 155parallel
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