Analysis of interatomic Contacts of Structural Units in PDB entry:
1VLY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VLY entry

There is 1 chain in PDB entry 1VLY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 3GLU 325
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 1VLY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 17Right-handed 310
Helix 2
2
A
36 43Right-handed alpha
Helix 3
3
A
48 52Right-handed 310
Helix 4
4
A
88 100Right-handed alpha
Helix 5
5
A
124 131Right-handed alpha
Helix 6
6
A
166 178Right-handed alpha
Helix 7
7
A
185 197Right-handed alpha
Helix 8
8
A
202 206Right-handed 310
Helix 9
9
A
210 219Right-handed 310
Helix 10
10
A
231 238Right-handed alpha
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There are 4 sheets in PDB entry 1VLY. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 146first strand
Strand 2
A
149 154anti-parallel
Strand 3
A
160 165anti-parallel
Strand 4
A
116 121anti-parallel
Strand 5
A
20 23anti-parallel
Strand 6
A
182 184parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 63first strand
Strand 2
A
69 78anti-parallel
Strand 3
A
81 87anti-parallel
Strand 4
A
27 33anti-parallel
Strand 5
A
108 112anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 284first strand
Strand 2
A
290 297anti-parallel
Strand 3
A
246 253anti-parallel
Strand 4
A
315 318anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 276first strand
Strand 2
A
265 269anti-parallel
Strand 3
A
306 307anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il